© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)
>Osa01LNT0038100.1
CCGAAGGTTGTGCTGGGAAATCCAGACATTAGTTTACAACATAGGGAGGGCGAGACCTCTAACAAAGTGCAAAAGGACTCGAGCAAGCTACCACCTCTAAGACCAACTCTAAGACAAAAGAGACAGTAGGGACTGCTGCTAAACATAGCAGACATCAGATAAGAAACACACAACCAAGACAAACCAAGACAGAAGACAGGCAGAACTGTGGCAACCAAGACAACTCTAAAAACAAGGAATCAACCTATCCCCAATCTATTACTTCCAGTATTAGCAGCAACGATCTTCATCTTCTCTTCTAAATCCATCATCCTGTCAGCTTCTTCAGCACGCCCTAAAATCTTCCACCCTATGAACGCACGCAAACTCTACCCCTATGAGTATCTTCGAAGACTGGGCCGGCAAATCCATCCTATAGATTGATAAAGTCAACACAGACGCCTTGCTGTCGACGGGTACATCGCCTACCAATTGCATTTACAGTACCGGTGTTCTTCCTGGGTGAAGCACAGTCACTCCATTTTAGTCTCACATTAATGAGCATCAATGGCACTAATATCCTCGAATAAAACCTTCTTGGATCTCAGATTGCTAGCAAATTTCTGAAGAGCACAAATTTTATCCTCAAACATTGGATGGTTTAACATCAGCATTGTATTGTTGTTAACAATAGCCCGCACTGCTAGCTCTTTGGCTTCTTCATGTTTCCTTTTCAACGAAATGCATAAATCTTCAAGCTCCTTTCTACAAGCCTCAGCTTTTTGTACATTTACATCATTTTCTAACAGCGCAGGCAACTCTAGTTCAGAAATTTCCCCCATCTCACATGATATTGCTGAAGCAATGGCATTATCCATGCGTGCTTTTGGAGTTCCACTTCCTGGAATTGTTTTATTTCCCAACTCTGAAACAGTTTCTGGTGATGTTCTCACAGCTGGAGATTTCATGATGTGCTTCAGCATAGCAGGAGCTTTTGGATCTGAAGCTGATTCCTTAGGAGTCTTTTGCATCATGGATGGGCTAGGCAACACATATTTTCCTTCACCATAGGACTTTGGGTTATTGGATGTTGTTACAGGGGAACCCTTCCTCCCGCTCGTTTCCATCATATCCTTCTCCAGAAGCAAGTCAGACTTTGAACTTATGGTGCCTGCTTTAGTAATTTTTGCTGCTTTCAGTTGAGAAAGTGGTCTATTGTCAGCTTTAGGAGTGCCTTTTCCTGCATCAAAAACATTGGTACTTCCCAAGAGTGACCGACTCGCAACGGTCTTATGTCCATTGCTATGTGCTGGGCTGCTAGGAGCATTCAGTGTAGAAACATTGCCTGTGCTAGGAGACTCAAGTCTAAGTTTGGAATTCTTATGATCTTTGGCATTCATGGAGGTGGTCAACAGCTCATGTAATGCTGGCTTGCAGAATGTTTTTGACGAAGCAATTTTAGGCCTTTCAGATCTTGCATTAGCTTGTGTGCTTTCCCTTTTCAACTCAGTAGAATGTGTATTCATCTTTTTTACCATGTTATTGGCACTACTTAATTGATTTAAGGTTGTTTCAGAAGTTAGTTGAGGAGGCCTGCTTGCTTTAACAATTGAAGACTGGGGCGGAAGAGACAAACTCCCTGCTTCATTCAATGATGCGGGTTTGACATTTCTCATATCCCTCTGCATTGATGAAGAGAGACTCTTTGGACCTGAAGTCCCCTTTTCAGCCTTCTTTGTTTCACATGATGTTTTCTTCAGAAGCTTCATTGAAGTTCCTCTAAACCTTTGGTTATCAGGACTTTGTGCATTAAGACATGCACTTTCCCCCACAATCTCATTCTGGTCATTTTGGGAATCTGATTGGGCCGTCAATTTTCTTGAGATGGAGGGGCACGTGGTGCTGGTGTTCATGAATTGTGAACTAACTGATTGCCCACTATCATTATTCCCCCTTGATATATGAACTTTACTAAGTTCCACCAAAGGAGCTTCTCTACAGTTCTCAGCAACTGCTGTTGTAGTCACGTGTGTAGGATCTTCACCAGGTGTAGAACTGCAAGGAAGATTCTGAGAAGGCTTGTTAACAGCTGCTCTTGATGGGTGTGTCTCATTAGATTTCTCTTCATGTGTATCAGTTGAGAGCAAATCTACTTTATTTTGGTCCATTCTTGCAGGGCTAAAGCTTCCCAAATGAGTAGGCCTCAGAGTACAAGCATCATGTGTTTGCTTTTGTTCCTTACTAATGTTACCTCCCAGAACATCAGAGCCCTTAACTGAAAGACCTTTTCTTGGATCCTTGTCACCCTCTGAAGAGACAGGGTTGACCTTTTCTACAAATTTACTCATACCATTCTCCTCAATTCCCAAGTTAGCATCAAGATTGAACTTGCCCAGCTCATTGAAATCAAAGGAAAAGGAGAAGTTGTCCTTTTCAGTCCCTTTTATCCCTTCAGAAAGATCGTTGCCATTTGAGTTGTTGGGCTTCACCTTTTTCTTGAGAGGACCAGAGAAATCTAGATCAGACATGCCCATTTTAAATGACGACAATTTGTCAAAGGCTCCATCAAGCCCAAAATCATCCAGGTTGTCAAAGCTGAATTTCTTGCTATTCTTCGGAACTGACTCAACGTCAAAGTCAATCGTGTCATTTCCTGATTTTGGTAATTTCCAAGATGAAAGAAAATCATTGCCAAAATCTTCACCAAGGGATGAACTTTTAGCATTTGCAGTAGATGCGGCTCTTTTTCGTGATTCATCCATGGTGCCAACAAGCTTGGGCAGGATGCGGCGGAACCGCGGAAGCAACAGGACGAACGACGGCGCCCTGCTCGCTCGCGGTCAGCGGAGGCGGAGGCGGCGGCGGCGGCGGGCAAACTGACGACAGAGGCCAACT
| Transcript ID | Chromosome | Locus | Ref | Alt |
|---|---|---|---|---|
| Osa01LNT0038100.1 | 1 | 31679119 | A | G |
| Osa01LNT0038100.1 | 1 | 31679943 | A | G |
| Osa01LNT0038100.1 | 1 | 31687053 | C | T |
| Osa01LNT0038100.1 | 1 | 31678593 | A | G |
| Osa01LNT0038100.1 | 1 | 31678604 | T | C |
| Osa01LNT0038100.1 | 1 | 31678988 | G | A |
| Osa01LNT0038100.1 | 1 | 31679629 | A | C |
| Osa01LNT0038100.1 | 1 | 31680088 | T | C |
| Osa01LNT0038100.1 | 1 | 31680190 | T | C |
| Osa01LNT0038100.1 | 1 | 31680228 | T | G |
| Osa01LNT0038100.1 | 1 | 31680308 | G | A |
| Osa01LNT0038100.1 | 1 | 31680705 | A | T |
| Osa01LNT0038100.1 | 1 | 31680917 | A | G |
| Osa01LNT0038100.1 | 1 | 31681184 | A | G |
| Osa01LNT0038100.1 | 1 | 31681307 | A | C |
| Osa01LNT0038100.1 | 1 | 31681335 | C | T |
| Osa01LNT0038100.1 | 1 | 31681697 | C | A |
| Osa01LNT0038100.1 | 1 | 31682712 | G | A |
| Osa01LNT0038100.1 | 1 | 31679361 | T | A |
| Osa01LNT0038100.1 | 1 | 31679143 | A | G |
| Osa01LNT0038100.1 | 1 | 31682992 | A | G |
| Osa01LNT0038100.1 | 1 | 31683006 | A | G |
| Osa01LNT0038100.1 | 1 | 31683198 | G | A |
| Osa01LNT0038100.1 | 1 | 31683415 | A | G |
| Osa01LNT0038100.1 | 1 | 31683871 | A | G |
| Osa01LNT0038100.1 | 1 | 31683939 | T | C |
| Osa01LNT0038100.1 | 1 | 31684453 | T | C |
| Osa01LNT0038100.1 | 1 | 31684616 | A | G |
| Osa01LNT0038100.1 | 1 | 31684686 | A | G |
| Osa01LNT0038100.1 | 1 | 31685600 | C | T |
| Osa01LNT0038100.1 | 1 | 31685790 | A | G |
| Osa01LNT0038100.1 | 1 | 31686508 | C | G |
| Osa01LNT0038100.1 | 1 | 31687006 | G | A |
| Osa01LNT0038100.1 | 1 | 31687187 | A | G |
| Osa01LNT0038100.1 | 1 | 31687191 | T | G |
| Osa01LNT0038100.1 | 1 | 31687601 | A | G |
| Osa01LNT0038100.1 | 1 | 31687627 | G | A |
| Osa01LNT0038100.1 | 1 | 31687934 | G | T |
| Osa01LNT0038100.1 | 1 | 31687977 | T | A |
| Osa01LNT0038100.1 | 1 | 31688563 | G | A |
| Osa01LNT0038100.1 | 1 | 31688834 | A | G |
| Osa01LNT0038100.1 | 1 | 31689443 | T | G |
| Osa01LNT0038100.1 | 1 | 31689681 | A | G |
| Osa01LNT0038100.1 | 1 | 31679057 | T | C |
| Osa01LNT0038100.1 | 1 | 31679175 | A | G |
| Osa01LNT0038100.1 | 1 | 31682552 | A | T |
| Transcript ID | MiRNA ID | Inhibition | Expectation | Score | Binding Start | Binding End |
|---|---|---|---|---|---|---|
| Osa01LNT0038100.1 | osa-miR5542 | Translation | 4.0 | 11.507 | 1 | 21 |
| Osa01LNT0038100.1 | osa-miR5789 | Cleavage | 4.5 | 18.121 | 1 | 21 |
| Osa01LNT0038100.1 | osa-miR5825 | Cleavage | 3.5 | 19.523 | 1 | 24 |
| Osa01LNT0038100.1 | osa-miR1440b | Cleavage | 5.0 | 7.901 | 1 | 21 |
| Osa01LNT0038100.1 | osa-miR167a-5p | Translation | 4.0 | 10.532 | 1 | 21 |
| Osa01LNT0038100.1 | osa-miR167b | Translation | 4.0 | 10.532 | 1 | 21 |
| Osa01LNT0038100.1 | osa-miR167c-5p | Translation | 4.0 | 10.532 | 1 | 21 |
| Osa01LNT0038100.1 | osa-miR171a | Translation | 4.5 | 15.577 | 1 | 21 |
| Osa01LNT0038100.1 | osa-miR395c | Cleavage | 4.5 | 12.011 | 1 | 21 |
| Osa01LNT0038100.1 | osa-miR160f-5p | Cleavage | 5.0 | 19.557 | 1 | 21 |
| Osa01LNT0038100.1 | osa-miR167d-5p | Translation | 4.0 | 10.532 | 1 | 21 |
| Osa01LNT0038100.1 | osa-miR167e-5p | Translation | 4.0 | 10.532 | 1 | 21 |
| Osa01LNT0038100.1 | osa-miR167f | Translation | 4.0 | 10.532 | 1 | 21 |
| Osa01LNT0038100.1 | osa-miR167g | Translation | 4.0 | 10.532 | 1 | 21 |
| Osa01LNT0038100.1 | osa-miR167h-5p | Translation | 4.0 | 10.532 | 1 | 21 |
| Osa01LNT0038100.1 | osa-miR167i-5p | Translation | 4.0 | 10.532 | 1 | 21 |
| Osa01LNT0038100.1 | osa-miR171b | Translation | 3.5 | 15.577 | 1 | 21 |
| Osa01LNT0038100.1 | osa-miR171c-5p | Cleavage | 4.0 | 10.794 | 1 | 21 |
| Osa01LNT0038100.1 | osa-miR171c-3p | Translation | 3.5 | 15.577 | 1 | 21 |
| Osa01LNT0038100.1 | osa-miR171d-3p | Translation | 3.5 | 15.577 | 1 | 21 |
| Osa01LNT0038100.1 | osa-miR171e-3p | Translation | 3.5 | 15.577 | 1 | 21 |
| Osa01LNT0038100.1 | osa-miR171f-3p | Translation | 3.5 | 15.577 | 1 | 21 |
| Osa01LNT0038100.1 | osa-miR167j | Translation | 4.0 | 10.532 | 1 | 21 |
| Osa01LNT0038100.1 | osa-miR418 | Translation | 4.0 | 13.059 | 1 | 21 |
| Osa01LNT0038100.1 | osa-miR530-3p | Cleavage | 4.5 | 12.173 | 1 | 21 |
| Osa01LNT0038100.1 | osa-miR530-3p | Cleavage | 4.5 | 11.029 | 1 | 21 |
| Osa01LNT0038100.1 | osa-miR395o | Cleavage | 4.0 | 12.011 | 1 | 21 |
| Osa01LNT0038100.1 | osa-miR815a | Cleavage | 4.0 | 7.094 | 1 | 21 |
| Osa01LNT0038100.1 | osa-miR815a | Translation | 5.0 | 13.692 | 1 | 21 |
| Osa01LNT0038100.1 | osa-miR815b | Cleavage | 4.0 | 7.094 | 1 | 21 |
| Osa01LNT0038100.1 | osa-miR815b | Translation | 5.0 | 13.692 | 1 | 21 |
| Osa01LNT0038100.1 | osa-miR815c | Cleavage | 4.0 | 7.094 | 1 | 21 |
| Osa01LNT0038100.1 | osa-miR815c | Translation | 5.0 | 13.692 | 1 | 21 |
| Osa01LNT0038100.1 | osa-miR169r-3p | Cleavage | 4.5 | 19.481 | 1 | 21 |
| Osa01LNT0038100.1 | osa-miR1428b | Translation | 4.0 | 16.097 | 1 | 21 |
| Osa01LNT0038100.1 | osa-miR1428c | Translation | 4.0 | 16.097 | 1 | 21 |
| Osa01LNT0038100.1 | osa-miR1428d | Translation | 4.0 | 16.097 | 1 | 21 |
| Osa01LNT0038100.1 | osa-miR2878-5p | Cleavage | 4.0 | 9.229 | 1 | 24 |
| Osa01LNT0038100.1 | osa-miR3980a-5p | Cleavage | 4.0 | 19.743 | 1 | 21 |
| Osa01LNT0038100.1 | osa-miR3980b-5p | Cleavage | 4.0 | 19.743 | 1 | 21 |
| Osa01LNT0038100.1 | osa-miR5340 | Cleavage | 5.0 | 20.029 | 1 | 23 |
| Osa01LNT0038100.1 | osa-miR5542 | Cleavage | 5.0 | 12.677 | 1 | 21 |
| Osa01LNT0038100.1 | osa-miR395u | Cleavage | 3.5 | 12.011 | 1 | 21 |
| Osa01LNT0038100.1 | osa-miR395o | Cleavage | 4.5 | 16.788 | 1 | 21 |
| Osa01LNT0038100.1 | osa-miR5340 | Cleavage | 3.0 | 12.423 | 1 | 23 |
| Transcript ID | Chr | QTL Gene | Character Major | Character Minor | Marker Interval1 | Marker Interval2 |
|---|---|---|---|---|---|---|
| Osa01LNT0038100.1 | 1 | An10 | Morphological trait | Panicle/flower | nan | nan |
| Osa01LNT0038100.1 | 1 | brt1d | Resistance or Tolerance | Drought tolerance | C742 | C904 |
| Osa01LNT0038100.1 | 1 | rfw1b | Resistance or Tolerance | Drought tolerance | C813 | C955 |
| Osa01LNT0038100.1 | 1 | qHUS-1-2 | Others | Others | RM246 | RG101 |
| Osa01LNT0038100.1 | 1 | qLRC-1 | Resistance or Tolerance | Drought tolerance | RM237 | RM302 |
| Osa01LNT0038100.1 | 1 | nan | Physiological trait | Source activity | RG532 | RM472 |
| Transcript ID | Pre-miRNA | Identity(%) | Alignment Length | Pre-miRNA start | Pre-miRNA end | E-value | Bitscore |
|---|
© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)