>Osa08LNT0415700.2

AATAAACATTATAATACCCGTGATGTCAAAAATCAAAAAGCATTACTTTTTCAAGCAATTAGGATCCTGAATTTATTGTGTACACCGAGTTTGGATTGGGATCGAATGGAACTGGAAGGATTCATCTGCATTTCAAATCAACCTGCCTGTTGTTATGCAGCCTTCACAGCTTGTTTTTCTTCTCCCTCTTCATCTGTATTGTTATTCCTGAAGCAGAAATAGACATGTATTTATTCAATTAGTTGAATTCGTGCAAAGCATCAACATACCTACCAGAAGAATGTTGCATTAGCTACAAAGTCATTCTCATATTGAGCAATTTCAAAAAAGGAGAATTTAAAACACACACATAATGGTTTCCTTACTAAAAGGAATGCTTGTATCCCTAGGTGTGGTTTTACACCATGCAGCAATGAGAACGATGCATTCATGTGGATTAAATATAATTTGCAAAGAAGAAACAGAGAATAGCAATAAACTATCTGCAATGACACCATAGGTCAAAATATCCATTGATGTGGGCAATAAACTTTAGTATCTGTGCATCTTAAGGTTCCGTTGTGATTTTGAGACAACATACTTGCTTAATATTATTCTGATTTTTTTTGTTTGAACAGATCCGCAACAAGGGCAACAAGTTTAACTAAGGTGGTCTACGTAAAGAGAAGTTCTGATGATAAGGTATTGTTCTTTTCTGATTCTGTGTTTTGGATTTTTGTTTGCACACTACCCAAGCTCCTAAACAGTGTGTTTCGTGCAAAAAGAATATATGTGTGATCTAAAATTTTGTTATATAATTTAATAAAGTAACTTTTGAACTTTATAGTAGTTAATCCATTCATTTATATCTTCAAAAGGCTATCACATAAATGACAAGTTCTTTAAATAATTGTCTAGTACTTACTGATGGTATTAGTGTTTACTGATATATATTTTTATGACAGATGGAAAAATGCAAGGGTATCTGAAAGATAACTGGACCTGAAACGTTACCTTGTTTGAGAGTATATGTGAACTTCTATTATATATGTACCTCTTACTTCTATTATATAACCTCCTATGATTTTGGGGATTTAGATGGGAATCATGACAGTCTGTTTTGTTTGGTTCCCTTGCCCACCATTATAGCATTGCTATCCTTTTCTACGATTAGTAATGGTCTGTTTTCTTTGCATGATTCGATTTTTATCAAAGACTGAGATCACTTAGTCTATCCAGCAAGTTTAAAAGGCTGGCACTGCTAGCATAAGAAAACAATTTGCATGCTTTTGACAGGGTCCCAAAGTAGACCTCCTATCCTAGTAGAGGTTTTCGTTGCCCAAACCGGTACAATGCCTAATCTTTGAGCTTACAAAATCAGAAAAACCCAAATTATCTAACAAAAACCAGAAACTGACCAGATGTTGTATCACCTGGATTTTTTTTTAATATAAATGGCGCCTATTGCGGTGGTGAGTACACTAAGGATATTGATGGGCTACAACTTTCGAAGTTTTCATGGCATAGCGTGTCCAAGTCCAACCATTAACGCAATACAGATAGTCGAGGCAAACGATACAGAGATGATGAGCTGCAAATACGTACCTGTGATTGGAAATGGGTACTTGAAATGGCAACAGGAAAGATTGGGTTAAGAACATGTATTGAATGAATAACTTTGTCCAAGGCTTGCAGAGGCGATATGTCTCTCCACTCCAGTGGGTAACTGGGTATAGCACTCATCTCGTTTACTTCACACTCCCCTATAGACTATTCACCTTCAAGCGATATATCATAATTGATTTATTAAACCAAGTAGAAGAAGCAAGACCACAACAGGCAAATAACCAGTAGCAAAATCATTTTCACCATGTGCTCGGAACGCTGTAGTGATTCTAATCGTTCTAGTAGAAGAAGATCCGAGTAGAAGAGGCAATAGGAGAAAAACCAGTAGCATAATCATATATATTTCCCCATGTGCTCCGAATGCTTGTGGACGATCATGCAAATTCAAGTGACGGATCAACCACCAAATAATCAGGTCGGTGGCATCTCGCATCTCTCGGTCATCCAGAGATCAAAAGAAGGACCTAGCTCAAGCTCGTGCTCCTCGTCCTGTCTCAGAGAAACCCAAACACCGCCACGACGCCGCGGTCCTCAAGCTCGTGCTCCCCGTCATGTCTCAGAGAAACCCAAACTCCGCCACGATGCGATGACAGCTCGTTCTGATGAGAAAACCCGCAAAGACCTCATCGCCGGAGGATAACCTCGCCGGCATCGGAGCTATTTGCCCCCTATATAGCGACGCTCGCGATGTGCCGGACCCCTTCCGGCTGAACACAGGTGGCATCAGCCACGGCGGCGCCATGATTTCAGCCGACGAAGTTCGGCGGCGAACCATAACCTTCGCCTTTCCTGACAGAAAAGGGACGACGCTAGACTAAAGCCTCGGCTTCCTTCGTCCGTGCGCCGACAAAGGAGGCGACGGAGCCCGGCCCCAGGCAGCTCAAGCCTCGCCGGATAGTGCCAGATCTGTGCGGCGGCGCCGTCGTTGAGAACGGGAGGTTAGGGTTGGGGAATCGATTTTGGAGATAAGAGATAA

Explanation	CPC Score
noncoding	-1.1929

Transcript ID	Chromosome	Locus	Ref	Alt
Osa08LNT0415700.2	8	21952378	T	C
Osa08LNT0415700.2	8	21952386	T	C

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa08LNT0415700.2	osa-miR5827	Translation	4.5	17.362	1	21
Osa08LNT0415700.2	osa-miR818a	Translation	3.5	18.048	1	22
Osa08LNT0415700.2	osa-miR818b	Translation	3.5	18.048	1	22
Osa08LNT0415700.2	osa-miR818c	Translation	3.5	18.048	1	22
Osa08LNT0415700.2	osa-miR818d	Translation	3.5	18.048	1	22
Osa08LNT0415700.2	osa-miR818e	Translation	3.5	18.048	1	22
Osa08LNT0415700.2	osa-miR444b.1	Cleavage	4.0	14.521	1	21
Osa08LNT0415700.2	osa-miR444c.1	Cleavage	4.0	14.521	1	21
Osa08LNT0415700.2	osa-miR1850.3	Cleavage	3.5	13.405	1	22
Osa08LNT0415700.2	osa-miR1852	Cleavage	5.0	17.062	1	21
Osa08LNT0415700.2	osa-miR1857-5p	Cleavage	4.0	13.019	1	21
Osa08LNT0415700.2	osa-miR1857-5p	Cleavage	5.0	12.732	1	21
Osa08LNT0415700.2	osa-miR2923	Translation	4.0	16.985	1	22
Osa08LNT0415700.2	osa-miR5080	Translation	4.5	13.488	1	21
Osa08LNT0415700.2	osa-miR5513	Translation	5.0	19.613	1	21
Osa08LNT0415700.2	osa-miR5513	Translation	5.0	11.54	1	21
Osa08LNT0415700.2	osa-miR2275c	Cleavage	4.0	13.922	1	23
Osa08LNT0415700.2	osa-miR1435	Translation	4.0	14.013	1	20
Osa08LNT0415700.2	osa-miR2923	Translation	4.5	11.373	1	22

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa08LNT0415700.2	8	qPN-8	Morphological trait	Seed	RM223	RM80
Osa08LNT0415700.2	8	aro8-1	Physiological trait	Eating quality	RM223	RM80
Osa08LNT0415700.2	8	dth8	Physiological trait	Flowering	RG333	RZ66
Osa08LNT0415700.2	8	nan	Resistance or Tolerance	Drought tolerance	RG978	RZ66
Osa08LNT0415700.2	8	nan	Physiological trait	Source activity	R727	R202

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus