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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa09LNT0427600.1

GCGTAGGACAGATTATATTTTAAAACGAAAATTATCTCCAGAGATTATGAATGAATGCTACAATTTTAAATCGACGGATAGAGACTGAATTTACATGATCAAATACAATCCATTAAAGACATGTATCAAACATCTGTCAATTTTTGCCGCATAATTTGCACCATCAATCTTTCTTTCTCAGATACCACGCAATTTGCACCATCAATCTTTCTTTCTCAGATACCACGCAAACCACTTGTGTTAGCATGCTTGTCTTGAAGAAGACCAAGGCTGGCAGCCGACCAATGTAAGTGGTGCTATGAGGCAGATGGATGATGGCAAGGTAACAAGTTCACAAGCTAATGGTAGAGAACTGAAACCATGTAATGGTACATATGGTCGATTCCAGTATCACATCGAAAGTAATTTACTGTGGTGAGTGTTGGGCGATGCTGTCAATGTTTTGCCGGCCTAACCGACCCTGCCTCGACGTGGTGGGATGCGAGATCCAGAGGCGTTTGCGGCGGGTAGCTGATGTTGGCACCAGCGTTGCCCAGAAATTTTCTGATGTTGAAGTAGTATCACTGTTCATCTGCCATCACTATAGTGGATTTGGTCAAAATCAAATACTATGCATTGATTTAAATTGCTCCCAGGATCCTCCCGCAAAATACAAATAATCTCGGCTCAGGTATGGGGTTGATTGTGGCGGTTAGTGAAACCGGCGGCCGTCGATCTCCGACGGGCAGGGGGCAACGGGTGGATGGCCGGCGAGGTTGGAAGGGGATAGTGAGGGGAGGGATGAGGGCGGATGGCCGGAGAGGTTCGAAGGAAATGGTGAGGGGAGGGATGAGAACGCGCAGCGCTTAGGGGAATCGCAGGGCGGCGAGGTTGGAAGGGGAGGCGGCCACCGATGGTGAAGGGAGGGATGGGGGCGCAAGTTAGGGGATGCACGGAGGGCGGTGCGATATCGTTGCAATGGGCGGAGGGGCAGCGCGGAGGAGATCGTTGTCGGTGGCGGCGTGGATCGGCGCGACGGGCGGAGGCGCGCGAGCAGAGGAGGCGGCGGCGAAGGGAGCGGGGAGAGCGGTTGGGAAGAGGGGCGTGATGGAGGGAGCCGA

Coding Potentia
Explanation CPC Score
noncoding -1.29776
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa09LNT0427600.1 9 2365416 C T
Osa09LNT0427600.1 9 2366416 A G
Osa09LNT0427600.1 9 2365469 A T
Osa09LNT0427600.1 9 2365537 C T
Osa09LNT0427600.1 9 2365994 A T
Osa09LNT0427600.1 9 2367398 C T
Osa09LNT0427600.1 9 2367500 G C
Osa09LNT0427600.1 9 2367986 G A
Osa09LNT0427600.1 9 2369513 T C
Osa09LNT0427600.1 9 2365739 T C
Osa09LNT0427600.1 9 2365729 C T
Osa09LNT0427600.1 9 2366466 G A
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa09LNT0427600.1 osa-miR398a Translation 4.5 11.815 1 21
Osa09LNT0427600.1 osa-miR398b Translation 4.5 11.815 1 21
Osa09LNT0427600.1 osa-miR2863a Cleavage 5.0 13.001 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa09LNT0427600.1 9 nan Morphological trait Root C711 G103
Osa09LNT0427600.1 9 qPC9 Physiological trait Eating quality RM4413 RM1896
Osa09LNT0427600.1 9 qAC9 Physiological trait Eating quality RM4413 RM5122
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus