\
RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa01LNT0041500.1

GAACGATGACAATTGCACAAGCCAAGGGTTTCTACAGTAAATATCTTTTGCAGATATACAGTTTCCAGTCAAAGCTACAGCCTCTTTCTACAGTACCTTTTTGGCATGGGTTCCACCCTCTGATGAGCATATCAGTTGGGGTGGTTGAATGGAGAAATAGGTAACAAATGTAAGGTAAGCGCAGCTTAATAATACATAGACCTTGAACCACACAGACGAAAAAAGAGATAGGTACAAGAAGAAGCCTGTCGAGCTGACTATTGCAATGAAATTAGCAAGGCACTCCGGTGTGGATACATCCCCTTCAGTTCCTTCATCAGGGAAGTGGCCTTGCATGAAAAAATCTGACAGAAGCTGGTCCTTCTGCCTGAACCTCTCTATCATCCAATCGGTTACTTCATCTTCTGACGTTGGAATGTCACAGAGCTTAACAGTTCTGATGTGGATGTGGACTTCAGAAGGATCGGTGCCATATATAATATCCAGAAAATCTGGCAGGCGATGCTTATACGCTATTGTGACATCATAAACTGCATCTAGGGAGCTCTTCAACTCTTGCAAACAGCAAAGGAACCCCTTTGTCTTTGGAAGAAGAACATTTTTAAGTATAGGCAGACCATGCTCCGAAGCATATTCTTGACTCTTGATGCATTTCTTCTCACATAATCCTCTCGCCTGCTCTGCTCGCCAGATGGAGATCGCCGCCCCTCCCCTGTTCAGCCGCGACTCGTCTTGGCGGCGCAAGGAGCGGAGGAGACGGGAGATTTTCTTTCTTTTACGCCACAAAGGGAAGGGGAAGACACTCGGGCTGCGTATGGCTAATGGGATTAGGAGGGTGGGAAATGGATATCATTTCCCTTTTC

Coding Potentia
Explanation CPC Score
noncoding -1.0028
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa01LNT0041500.1 1 33154983 C T
Osa01LNT0041500.1 1 33156338 A G
Osa01LNT0041500.1 1 33156438 T C
Osa01LNT0041500.1 1 33156826 T G
Osa01LNT0041500.1 1 33157132 G A
Osa01LNT0041500.1 1 33157989 A G
Osa01LNT0041500.1 1 33158289 A G
Osa01LNT0041500.1 1 33156756 C T
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa01LNT0041500.1 osa-miR408-3p Translation 5.0 23.444 1 21
Osa01LNT0041500.1 osa-miR1872 Translation 4.5 12.092 1 24
Osa01LNT0041500.1 osa-miR2106 Cleavage 5.0 17.086 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa01LNT0041500.1 1 gpy1 Others Others RG541 RG101
Osa01LNT0041500.1 1 nan Physiological trait Source activity RG532 RM472
Osa01LNT0041500.1 1 An10 Morphological trait Panicle/flower nan nan
Osa01LNT0041500.1 1 qCC-1 Physiological trait Source activity RG541 RG101
Osa01LNT0041500.1 1 brt1d Resistance or Tolerance Drought tolerance C742 C904
Osa01LNT0041500.1 1 rfw1b Resistance or Tolerance Drought tolerance C813 C955
Osa01LNT0041500.1 1 qLRC-1 Resistance or Tolerance Drought tolerance RM237 RM302
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus