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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa01LNT0041900.1

TTTGAAGTTACTCTGAAATTGAATTGAGAAAACAACTTCCATTCAAACATGTAGTAGATGATTTAAGCTCTCACATGTCCCAGAAGATTTAGGTGGTTTGAATATGAATAAACCCCTCTGTTCCTCCTGCCACTAATTATTTCCAGTAGTAAAACTCCAAAACTAAATACATCTGATTTGACAGAAAAGACTCCGTCCATTGCATATTCTGGAGACATATAGCCATATGTGCCGACCACTTTTCTGGTATTGATTTCTGTCTCTTCACTTCCAAACATTCTTGCCATGCCAAAGTCAGAAATTTTGGGAGTCATCTCCTTGTCAAGAAGAACATTACTTGCCTTCAGGTCTCTGTGGATGATTCTGTATCTTGAATCCTGGTGAAGATATAGTAAACCTCTAGTAATGCCTTCTATTATACGGTATCGCGCTTGCCAGTCAAGCAGGACACTGTTGGATTTTTCTGTTACATTTGCAAACTGTTATGTTCTTCACAGTATTATCAGCCATTTTTTTCATGGTCATAAAAAGACTGAGATAGTCATACCGAACAGAAAGTAGTCTAGGCTCTTGTTTGCCATGTATTCGTACACAAGTATCCTTTCTTGTCCACTAATGCTGAAGCCGAGAAGCCGAACAAGATTCCTATGCTGAAGTTTAGCTATCAACATTACCTCATTCTTGAATTCGTCGAGACCCTGTACGGATGTTTTGGACAACGTTTTAACTGCTATTTCTTGTCCATCCTCGAGCTTACCCTTGT

Coding Potentia
Explanation CPC Score
noncoding -1.22854
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa01LNT0041900.1 1 33250308 A T
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa01LNT0041900.1 osa-miR6246 Translation 4.5 7.046 1 23
Osa01LNT0041900.1 osa-miR319a-5p Cleavage 5.0 18.3 1 21
Osa01LNT0041900.1 osa-miR1847.1 Cleavage 4.0 13.001 1 21
Osa01LNT0041900.1 osa-miR5488 Translation 3.5 13.372 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa01LNT0041900.1 1 nan Physiological trait Source activity RG532 RM472
Osa01LNT0041900.1 1 nan Morphological trait Root RM212 R2417
Osa01LNT0041900.1 1 An10 Morphological trait Panicle/flower nan nan
Osa01LNT0041900.1 1 qCC-1 Physiological trait Source activity RG541 RG101
Osa01LNT0041900.1 1 brt1d Resistance or Tolerance Drought tolerance C742 C904
Osa01LNT0041900.1 1 rfw1b Resistance or Tolerance Drought tolerance C813 C955
Osa01LNT0041900.1 1 qLRC-1 Resistance or Tolerance Drought tolerance RM237 RM302
Osa01LNT0041900.1 1 bc7(t) Morphological trait Culm/leaf nan nan
Osa01LNT0041900.1 1 gpy1 Others Others RG541 RG101
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus