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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa01LNT0045100.4

CATAACCAGAAAAACCCATGTCTTACAATTAATAGGTCAACCCATAGTTCATGGAGTATTGTACATTGGAAGAGAAGCACACACAATATTAGAACACACCACCATTTTTTTCCACCGCTTCATTTTCTTTTTCTTACTCTTCACACACAACAATCATCAGGAAAAAAACTGCCTGTAAACAGTTAGAATTGTCTCAAATCAACCCTGACAAATCATACATTTTCACGGAGGGTTCAACCTCGACTCTCGAGAATGCAATCTAAATTAGAAAATACACAAAGGAAGAAAAGCAACCTAACAATAATAAGCTCTGATAATATGACTGAATTATGAAACCGGAACATCCTTCAGTGAGGCAGGATCCACCTTAGGAGGGTCTGAATGACGCCTCCCTCTTTCCATCAGCTTATCTGCATGCTCACCATTTGGTTTGTCTGCGACTGGGAAGGATAAGCGCTTCTTTATTGAAGAATGGACCAGGGGTACTCTCTCAGGAACCTCAAACCTGTCAGTCAATAGACTGCGGTACCGAGACTTCGCCCTTGCAGACTCTGTGGACTGCATGTAGCTGGGGAGAGCTGGTGTGCTTGTTAGGCTCGCATCATCCCGAACAGAGGCACCACCTGTGCTCTGCCTCCTTGGGCGTTCAGAGCGTATGCTTGTGATGCTCCTCAAGTCATCCTCCTTATATAGCCAGCTATCCCGTGGACTTGCTGGTCTGATCTTTCCGGTAACTGAGGGGACCCTTGACGGGGGAGTTGATGGCGATTGCCGACTTGGTGGACGGCTTGACTTGTTTGGTGTTGCAGGTCTCTGGATTGAGATTGCGCGGGGTACATAAGTACGAGAAGCGCTAGTGCTGGGATTCTTTGTTGAATAATGGTCCTTAGGATCCTTATCTGATATCACTCGGCTCTCCCAAGGCCTTGATGTCATCCAGCGTTCCATCCAGCTCCATCCCCAGTTAGGATTCCCTTGATCCGTGAAGGTAGGTGTTATAGTTCGGCCAGAATTCTTCCACTGGTGAGAAAATGCATAGGCAAGAGCTCTTTCCCGCCTTAGCGCAGCTTCTTGTTTCATCATTAGGCTGGTCTCAACCTGCTCCTTGGACTGATGGCTATGATCCCAATCTTCATCAATCTTCATTTTCTCAAGTTCCCTCTGATGCTTTAATTGTAGCTGCCTTTGAAGAGCCTGTTTTTCCTCCTCCATCTTCACCCTTCTAGAGTATATTTGAGTTTGAACTCTGGTCATGGTTTGTGTGCAATGCAAGGTGTGCGCAGTTTGTCGTTTGACGGCGTTTCCATCAACCAGCGACTTCAATCTAACTAGCCCTCTAAGTGCTCGCAGCGCTCTTCTTGCCAGATAACCCCTGAAGGCAGTCTGAATCTTGATAGCGGCAAGCTCATCCTTTGAACTAACAGGCGATTTCGGCACAGCCGTGGTGGCTGTTGTGAGGCGGACCACCTCAGCAGCGGCCTGGGCAGCGACGGCAGCAGCTTCTGCAGCAACAGCAGAGGCAAGTGCAACAGAGTACGCATGCTTGTTCTGTTCACTGTCAGTTTCAACAGCCTTGACATCTTTGATCTCCTCAGGCTGTGGCTGGATAGGGTGTGTTGGCGGTGGCGGTGGCGGCTGTGGAGGCGGTGCTGTAGAGGTAGGCACTGCCACTGTTGAGGTCCAAGGATCAGACTTCTTAGACTTTCCAAATGGCCATTTCCTCCTGGATCTCGACTTGTCCGCCTTCTCGATCTTAGCTTCCCTCCCATCTGGATCGGATGAGCTGAAGACTTTCTTGACAGCACTGAACCAATTTCCTTTCTTACCCATTTTTTTGGTGTTCCTTTATTGTGTCTTCAGCTAAAGCCTGGAGCGGAGCCACGGAAAGCGCGCAGCCAGGAAGAACGCCAAAACCGGGGGACGCAACGCAAAACCCCAAAAGAAAGATGCCGTTTTTTACAGTGAGAAAAGGCGAGAGAGCTTTCACCTCAAAGCAACCAACCACCGAAAGCCGCTCACCTTCCTCGCCCAACTGAAGCCGCCAAGAAACCTAACTCGAGCCGCCCCGCCCCTGCCTCCCTCCCAAGCCACCGCCCACCGTCCCTCCCCCTGCTTCTACTACGGGTCAGATCAAATCAACGACCCC

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.630445
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa01LNT0045100.4 1 35709887 A G
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa01LNT0045100.4 osa-miR395b Translation 4.5 9.833 1 21
Osa01LNT0045100.4 osa-miR395d Translation 4.5 9.833 1 21
Osa01LNT0045100.4 osa-miR395e Translation 4.5 9.833 1 21
Osa01LNT0045100.4 osa-miR395g Translation 4.5 9.833 1 21
Osa01LNT0045100.4 osa-miR395h Translation 4.5 9.833 1 21
Osa01LNT0045100.4 osa-miR395i Translation 4.5 9.833 1 21
Osa01LNT0045100.4 osa-miR395j Translation 4.5 9.833 1 21
Osa01LNT0045100.4 osa-miR395k Translation 4.5 9.833 1 21
Osa01LNT0045100.4 osa-miR395l Translation 4.5 9.833 1 21
Osa01LNT0045100.4 osa-miR395s Translation 4.5 9.833 1 21
Osa01LNT0045100.4 osa-miR395u Translation 4.5 5.071 1 21
Osa01LNT0045100.4 osa-miR395u Translation 5.0 9.833 1 21
Osa01LNT0045100.4 osa-miR166h-5p Translation 5.0 15.339 1 21
Osa01LNT0045100.4 osa-miR437 Cleavage 4.0 18.706 1 21
Osa01LNT0045100.4 osa-miR395m Translation 4.5 9.833 1 21
Osa01LNT0045100.4 osa-miR395n Translation 4.5 9.833 1 21
Osa01LNT0045100.4 osa-miR395p Translation 4.5 9.833 1 21
Osa01LNT0045100.4 osa-miR395q Translation 4.5 9.833 1 21
Osa01LNT0045100.4 osa-miR395v Translation 5.0 9.833 1 21
Osa01LNT0045100.4 osa-miR395r Translation 4.5 9.833 1 21
Osa01LNT0045100.4 osa-miR815a Translation 5.0 9.772 1 21
Osa01LNT0045100.4 osa-miR815b Translation 5.0 9.772 1 21
Osa01LNT0045100.4 osa-miR815c Translation 5.0 9.772 1 21
Osa01LNT0045100.4 osa-miR1865-3p Translation 3.5 17.731 1 24
Osa01LNT0045100.4 osa-miR2922 Translation 5.0 16.871 1 20
Osa01LNT0045100.4 osa-miR395y Translation 4.5 9.833 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa01LNT0045100.4 1 nan Resistance or Tolerance Insect resistance RM543 RM472
Osa01LNT0045100.4 1 dth1.1 Physiological trait Flowering RG541 RG109
Osa01LNT0045100.4 1 ng1 Morphological trait Seed RG374 RG394
Osa01LNT0045100.4 1 ng1 Morphological trait Panicle/flower RG374 RG394
Osa01LNT0045100.4 1 sf1 Physiological trait Source activity RG374 RG394
Osa01LNT0045100.4 1 sf1 Morphological trait Seed RG374 RG394
Osa01LNT0045100.4 1 nan Physiological trait Source activity RG532 RM472
Osa01LNT0045100.4 1 nan Physiological trait Source activity RG374 RG690
Osa01LNT0045100.4 1 nan Resistance or Tolerance Drought tolerance RG690 RG810
Osa01LNT0045100.4 1 qH2O21 Others Others C86 C813
Osa01LNT0045100.4 1 qChll1a Morphological trait Culm/leaf C86 C813
Osa01LNT0045100.4 1 brt1d Resistance or Tolerance Drought tolerance C742 C904
Osa01LNT0045100.4 1 An10 Morphological trait Panicle/flower nan nan
Osa01LNT0045100.4 1 sf1.1 Physiological trait Sterility RM212 RM315
Osa01LNT0045100.4 1 rfw1b Resistance or Tolerance Drought tolerance C813 C955
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus