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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa10LNT0070200.1

GCTGAATCAAACTGATTGATTATTAGTTAGTCAGGACGTAATTTCCCAAATTATGCCTGAATAAAACAGATACAGCTGGTGGCTCATCCTACCACTACTGGGAGGTTGGAACTCTAGAAGTCATCTCTCCCATTCTGCATCAATTAGAAATATACACATCTCTAGCCTAGATCATTTAACCCAATTTTGTATATCCTATCATCAGATCATCCTTCTTGCACACAAAATACTGGCTCTTGTCATAGGAGAAAAAAAATCTCAAATGGTAAATGGTAAGCTACGAACAAGGAGTTCTTGTTCCAACAAAGCCAAACCCCATCACAGTGAATGCAACAGCTTGGAGGTAGATGTAGATGTAGTATTTATGATTTCCAAGAACGAAATCATACGATGCACATATAAGGAGATAGAGCGCAAGCAAGAGCTCAGGAATGTAAATCCTTTCAGCACATTCAGTGGGCTTCAGTGGTTCAAGAAGTGGGACATCAAGCTCATCCTTCACCTGATCACCTACTTTTTCAGTAACTACCCAATCATTTGCACGTGCAGTTTCAAGTAAACCGCTTAGAGCTGCACGCATACGGTGCATGGCCATGACATTCTCAAATAGAATCCAGAATGGCATGAGATGGACTGACCCTGGATTTCTGATGGCATTCATAATAGTAATGGCTGTGGGAATATAGACCAGGCCCCACACAGGAATAGTGACTTCAGGAACCATGGCAGACAATGGGATGACAATACAGTAGAACAAGAAAGTCAGGATGGGAGCAATGGCTCTCCGTACGAAGAAAAAACTGTACAGAAGATGATATTTCTTCCACATTGATACCTCCTTGTTTGTAATAATTTCCCATGCCATTTTTCTGAAAAGATTGGCAGCACCACATGTCCATCTATGTTGTTGGTGACGGTAGGCCTGGAAGGTACTTGGGAGTTCACTCTTCACCCTTATATCACCAACATACAAGAACTCCCATCCCTTTAGGCTTGCCCTTACAGCCAAATCCATGTCTTCCACAGTGGTGCGGTCTTTCCATCCTCCAGATTGATTAATAGCAGATACGCGCCACACACCAGCTGTACCGTTGAAACCAAAGAATGCGTGCATAAATGAGCCTGACTCTTGCTCCACTTTGAAGTGGTAGTCCAGTGACATCTTCTGTATCCTTGTCATCAGGCAAACATTGTAGTTCACTGCAAAATCACCCGGCAAAGGCCAGGTCAGGAACATCCAAACTCCCAACGTGTCTGCACAAGTGCAATCTTTGGATTGTGCAAAAGATATGGCATGGTTTTTAAGAGGAAGTCTGATTCAGGCTCGAAATCTGCATCGAAGATAGCAACAAAGTCACACAGTTGTGCATATGTATGCTCCATGCCTTTCCGCAGGGCTCCTGCTTTGTATCCCTTCCTGTTGTTTCTAACCTCATACTTGATATTAATTTTCTTGCTGGCCCATTCCTTACATTCAAGCTCCACTAATTCTTTAACGAAAGGATCAGTGGAGTCATCCAAGACTTGGATTATGATACGGTCCGGTGGCCACGTGAGCGCGCACGCCGCTCCGATGGAGAGCTTGTACACCTCCTTCTCGTTGTACATGGGGATCTGCACGAGCACCATGGGGAACTCCGCGGGCGCGGGCGCGGGCGCCTCGACGTCGGGCGGCGCGGCCATGGGCTCCCAGCGGTAGCCGTACCCACGGAGGCGCCTGGCGGCGGCGGCGGCGAGGCTGGCGAGGCCCATCCAGGCGGCCTCGGCGACGAGCATGGCGGACATGGCGAGGCACGCCCACACCGCGGCCCGCAG

Coding Potentia
Explanation CPC Score
noncoding -1.16142
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa10LNT0070200.1 10 13897742 A C
Osa10LNT0070200.1 10 13898867 G C
Osa10LNT0070200.1 10 13899361 C T
Osa10LNT0070200.1 10 13897640 T C
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa10LNT0070200.1 osa-miR5534b Translation 4.0 12.235 1 21
Osa10LNT0070200.1 osa-miR1440b Cleavage 4.5 17.184 1 21
Osa10LNT0070200.1 osa-miR169i-5p.2 Cleavage 4.5 19.72 1 22
Osa10LNT0070200.1 osa-miR1857-5p Cleavage 3.0 15.693 1 21
Osa10LNT0070200.1 osa-miR1869 Translation 5.0 16.969 1 24
Osa10LNT0070200.1 osa-miR5144-5p Cleavage 5.0 22.782 1 21
Osa10LNT0070200.1 osa-miR5522 Cleavage 4.0 13.691 1 21
Osa10LNT0070200.1 osa-miR5526 Translation 4.5 7.155 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa10LNT0070200.1 10 nan Resistance or Tolerance Drought tolerance RZ892 BCD386
Osa10LNT0070200.1 10 qSPB2-1 Morphological trait Panicle/flower C1633 RM239
Osa10LNT0070200.1 10 qSPBp10-2 Morphological trait Panicle/flower C1633 RM239
Osa10LNT0070200.1 10 Phyllochron Morphological trait Culm/leaf R1629 R2447
Osa10LNT0070200.1 10 nan Physiological trait Sterility C701 C16
Osa10LNT0070200.1 10 ssd10 Morphological trait Panicle/flower RG257 RZ583
Osa10LNT0070200.1 10 nan Resistance or Tolerance Other soil stress tolerance R1629 R2447
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus