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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa10LNT0072400.1

GTGTGGACGAGGATAAATAATGGAATAAAATCCCTGTAATAAGCATAATTGGGAAGCTCAGGATATTGATTAACTGTGCTGATAATTTCTGCGCTGAACTTTCACTGCTTGCTAGCCAGAGTGATGTCGGAAATCACTGAGATGTTCTGAGATGTTAGACAGGAACTCACGGGGGTGTGGACTGATGATATGGAGTATTGTACAGGATTCAGCAACTACTGTAAATCTGTAATTCAGTGTTTCTTCCAACAAGCAACGCGCAAACAATGTCGACGAAGATGGACACTCCCCTGTTGTACTATCTGATAGCTCCAAGCAGATTTGCACCACCGAGCTTAGCACCAGTTAATTGAGTTTCACGTAAATCAACTTCCCGCAGGTAAGCTCGCTGAAGATTTGCACCTTGCAAGTTTGAACCAGACAATTTAGCTCCCTTCAGATTGGCTCCTTCAAGGTTAGCTCCTGTCAAATTGGCACCTGTAAGGTCTGCCCTCTGCAGATGTGCTGAACGAAGATCTGTTTCAATGAAGCTACATTTTACCAAGCATGCATCTTGCAGGTTTGCACTTTGTAGGTTGGCTCTGTCCAAAGTAGACTCTTGGAGATTTGCTCCTACAAACTCACACGCAAATTAGCATAATTGAACGAAGATCGAGAAGCTTGAACCTCCCGAAATTTAGCTTTGTAAAGATTGGCAAGGGAAAATTTTGTCTCCTCAATACACCCGCAACTGAAATCAACTTCCGATAAGTCAAGCTTGGACAGGTCAAGGCCAGAAAGGTTGACGCCTCGGAACCGGACTTTATCAGCCTGGATGCACTTGATCACGTCCTTGCGAGTCAGCTCGGCCTCTGAAGATCTTCCAATCTTATCATCCCAATCCTCAATCCTTTCACTTATGCAATCGATCAATCCAGGAAGCCGGTAGTACTCCGCCTCCCGCAGCAGCTGCCGGTACTCGGCGTCGGCGAGCGCGGGGACGGCGCCGTCCCTGAGCCAGTTGAGCACGTGCCGGAACAGCTCCCCGTCGCGGTCCACGAACACGGCCCCATCCTCGGTGGTGGGGAGGCCGTGGGCGGCGGCGCCGGAGAGCGCGGCGGCGAGGAGCGACCCGGGATCCCGCTGCGTGAGCGTGTCCGCCGTCGTCTCGTACCTGCTGCCCCCGATGTTGAGGAGGATCGGCGGCTGCATGGCGGCGAGCGGCGCGGGCTCCGGATCTCGCCGCGCTTCGCTCTTGCGGTTTCTATGGCGCGCGCCGGCGCTGGGCCCGCGTCCCGCCGCGGCGGCGGCGGCGGGGGAAGCCGAGAAGTGAGGCGGGTCGAGGAGGAGAGGTCGCGCCGGCCGAGCCGAGGGCAGAGCACGGTACGCGCAGCAGTTGCA

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.895223
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa10LNT0072400.1 10 15690022 A C
Osa10LNT0072400.1 10 15690584 C G
Osa10LNT0072400.1 10 15691076 A G
Osa10LNT0072400.1 10 15691141 T C
Osa10LNT0072400.1 10 15691580 T C
Osa10LNT0072400.1 10 15692011 A G
Osa10LNT0072400.1 10 15692037 G A
Osa10LNT0072400.1 10 15690184 T A
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa10LNT0072400.1 osa-miR5789 Cleavage 5.0 20.573 1 21
Osa10LNT0072400.1 osa-miR5793 Translation 3.5 21.825 1 21
Osa10LNT0072400.1 osa-miR171f-5p Cleavage 4.5 17.024 1 21
Osa10LNT0072400.1 osa-miR5519 Cleavage 5.0 14.115 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa10LNT0072400.1 10 ssd10 Morphological trait Panicle/flower RG257 RZ583
Osa10LNT0072400.1 10 nan Physiological trait Sterility C701 C16
Osa10LNT0072400.1 10 nan Resistance or Tolerance Drought tolerance RZ892 BCD386
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus