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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa10LNT0073000.1

GTTCATCATAATTCAAACCATTCAAAATTTATTAGTGGTCAAAGTTACAACAGGATTGGTCAACAGTCACGAGTAAATAGAAATGGACGGAGTAATGTTTTTCCACTCTTGATGCCCTAAACAGTTTAAAGAATCCCTAAAAAGAAGGGATTTTGAAAAAGGATGAAGTACAAGTACATATCTAGGATTGATGTGAGTAGCAACATCAGCTCCTAATTTGTTCTTAAGTATACAAGTTATTCTTGCGACAACGGATTAAGCTGGAGACATAAAATACACAATCTTATCCAAAGAGAGATTTTATTTATAAACGCCTGTAATCGTCATCCGCACCTTCATCGAACACAACTGATGATCCCACCCGGAAATCGAGCTGCTTTTGATGCTTCTTCCTTCGACGTTCGTCAAACTCCTCCCAACCGTCCACCTGCCGAAGAACGTCGTTTGTGATTTCAGTGCCATGGAGATCAAGTGTAATGAGCTGCGAGCATTTTATGAAGAAAGCTGAAGGTAGGGATGTAAGACCATTGTTCCGTACACTCAAAGCCTTGAGATGTTGAAGGTTTCCAAAAGCCTCTGGCAGTTCAGCCAAAAGATTTGATGACAAATCAACCTCATTGAGAGATTCACAACCACCTATAGATGAAGGCAATGAAGTTATCCTATTATTATTTGCTATCAGAATCTCAAGATGCTTCAGTAACCCTATTTCAACAGGTAAGTTCTCAAGCCTGTTATTTGCAATACGAAGTTCACGTAAATGAGTTATTGAGCCCAAACTTGAAGGTAAAGTGACCAGCCGATTTTGGCTTAGAGATAAAACTGTTAATGTTTGAACACATGTTAGGCCTTCCCAGGAAATGTTCCCATCAGCTATATCATTAGCAGTCAGGATCAATTTCTGTAAAGATCTCAGAGCAGCAATTTCTTGTGGAATTGCTTCAATACAGTTGTTACTGACATCCAGTACTCTAATAGAAGAACCACAGCCCCATACTTCTTCAGGCACTGCCTTCAAGCTGGAATCAGACAATGCAATAATACCAGTTGCTTTCCAACGTTCAGGTCGGATTTTACTGACATTTGTATCCGACTTTTGTATTTGAGCTTCCTTCACATTTGAGGCTCTTCTCGTGCTTGGTGCTGGAACACTACTATTCTTAGTGATGGGACCGTCCCCCTGATGGAGCCCCTGCGAGGCCATGAGCATGACCTTGGATCCGTTCACCACCTGCATCGAGCTCAGGCTGGCGGCATCCGCCAGAACTTTCCCTTTGCAGATGAGCCTCTGGCCGCGGGGGAGGACGTTGGTGAGCGGCTGGAGGAGGCGCTTCAGGTCGGCGGCGGTGGCGGCGGCCGGGACCTCCACCGGGATCGTGCGGCCGCCGAACTTGACCTGGACGGTGATGGTCGGCGGCGGCGGCGGCGGCGAGCTCTCCATGGTGGCCTCCCTCCCGTCTCCCGTCCACTCTGCCAACTGCCTACTTGTTTGGCTGATTGCCCCTTC

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.717784
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa10LNT0073000.1 10 16670805 C T
Osa10LNT0073000.1 10 16665989 G A
Osa10LNT0073000.1 10 16666177 C A
Osa10LNT0073000.1 10 16666395 A G
Osa10LNT0073000.1 10 16666473 A T
Osa10LNT0073000.1 10 16666527 G T
Osa10LNT0073000.1 10 16666725 A C
Osa10LNT0073000.1 10 16668277 G C
Osa10LNT0073000.1 10 16670734 C T
Osa10LNT0073000.1 10 16670969 A G
Osa10LNT0073000.1 10 16671359 A T
Osa10LNT0073000.1 10 16671848 A G
Osa10LNT0073000.1 10 16672181 C A
Osa10LNT0073000.1 10 16672582 A G
Osa10LNT0073000.1 10 16672956 T C
Osa10LNT0073000.1 10 16668679 A T
Osa10LNT0073000.1 10 16668728 T C
Osa10LNT0073000.1 10 16668776 T C
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
Osa10LNT0073000.1 DTM_#DNAt_MULE_japo_Os2269 Chr10 - 16668651 16669548 897
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa10LNT0073000.1 osa-miR5827 Cleavage 4.0 13.742 1 21
Osa10LNT0073000.1 osa-miR6253 Cleavage 4.0 18.748 1 22
Osa10LNT0073000.1 osa-miR159f Cleavage 5.0 19.719 1 21
Osa10LNT0073000.1 osa-miR437 Translation 5.0 18.408 1 21
Osa10LNT0073000.1 osa-miR3981-5p Translation 5.0 19.86 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa10LNT0073000.1 10 nan Resistance or Tolerance Drought tolerance RM596 RM271
Osa10LNT0073000.1 10 ssd10 Morphological trait Panicle/flower RG257 RZ583
Osa10LNT0073000.1 10 nan Physiological trait Sterility C701 C16
Osa10LNT0073000.1 10 nan Resistance or Tolerance Drought tolerance RZ892 BCD386
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus