>Osa10LNT0073400.1

TGTGGAAAATAATCATAAATCTCTGCATTCATTTTCTTCCTTCTCCCAATTAATACTTCACTTCTTTCTTTCTTTATAACATATCACACACACGACACATGGCCATGCCACACAACACAACTCCAGATAAATGACATGACACACAATCAAACCGACCAACTGAAAGGAAAACTCATCATCAGAAGTTCAGAATAGCAAACACACATTCAGACACACAAATTAAGGTAGAGAGGAGAGAGGAAGAGAACAAAAAAGATTATATACCCCCCTTTCAATTAACTTCAACCACAGCCAAGAATCAGACTTGCCTACCACTAGGCACACAAGCAAAATCCATCAAGTGATCACCTCGCTCCTCTTCAGCCTACCTCCGCTTCCGCCTCCGCCTCCACCTCCACCTCCACTGGAGCAATCCTTCTTCCACCTCAGCCTCCCGCACCTCGGTGGTCGCCGAAGGCGATCGCCGCGCCGCGCCACCATCAAGGGGAAGTCTCTGAGCTGCCACAGCTAGGGATGATTTGGGAGATGATAGCTAGGCAGGGACAGAGGAGAAATGGAAGAGAAGATGAGGGCAGTCCAGCCTAGTCTCTAGTCTCTCTACTTGACAAGTGACAGGCACTTGCCACTTCTCATTGGCAGAAAAGCAATCGGGGGGTGGAGGGGAATAAGGGCAGCGAATGAGGGGTACACCTCAGGTTTGGGAATTAAACTAATGGCAATGATTAGGGGCGTGGTGAGGGAGAGAAAAGCTCTCTTGGAATCTGCATCAGTGGACTAAACTACATGAGTTGGGATCTTGAGAAATCCTCACTTTTGTATCAC

Explanation	CPC Score
noncoding	-1.09349

Transcript ID	Chromosome	Locus	Ref	Alt
Osa10LNT0073400.1	10	17089558	A	C
Osa10LNT0073400.1	10	17089934	T	C

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa10LNT0073400.1	osa-miR5834	Cleavage	5.0	7.075	1	21
Osa10LNT0073400.1	osa-miR2864.1	Cleavage	4.0	22.835	1	21
Osa10LNT0073400.1	osa-miR2863b	Cleavage	5.0	8.655	1	21

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa10LNT0073400.1	10	qLSVB10-1	Morphological trait	Panicle/flower	RM258	C677
Osa10LNT0073400.1	10	qLVB10-1	Morphological trait	Panicle/flower	C677	RM258
Osa10LNT0073400.1	10	nan	Resistance or Tolerance	Drought tolerance	RM596	RM271
Osa10LNT0073400.1	10	nan	Physiological trait	Sterility	C701	C16
Osa10LNT0073400.1	10	nan	Resistance or Tolerance	Drought tolerance	RZ892	BCD386
Osa10LNT0073400.1	10	ssd10	Morphological trait	Panicle/flower	RG257	RZ583

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus