>Osa10LNT0075600.1

GTTATAAAATTGGTATAATCATTGATGTTTTGATACAACAGACTCTGCCTTTTCATGAAACAAAACAGCAGTGACACACAACAAAACTGGAGACATCCTCTAAGCAAAACTTCTCAGTATCCCCCAGGACACTGCCGCGGATGGCATGACTGCACACTTGTGCCCTGCCAGCTCCAGATGAACCAGTGATTATAATATCTTCAGAGTAGATCTACCAAGACAAATCATTCAGGATTCTTCGCTGGTAGTAGTAGGATGCTCTGTTCTATTGCTGAGCCGAAGCTCCAACTTTATGTTCATGGCCGCCAACTCGGAGGCCAGGTATCTGAAGACGTAAGGCATGGCGACGGTCTCCATCCCTTTGCTTGTTTTGCAGGCCTGGCAGGCAAAGTTCTTGGGAGGTTTTACGGTGGGGAGCCCGAGCATGTCGCGCTTGGCTTTCTTCTGGCTTTCGGATTTGATCACCGTCGCCGTCAGCAAGCTCCCGCAGATGGAGCACACGTCCGCGATATGGTAGTCGGAGCAGGAATGGAGCCTGTCATGTAGGAGGTAAGAGGCACCATGAGCGAGAAGCGCGTCTCGCTCCATCTCACCGAACCGAATCCCTCCACCGTATTTCCTTCCTCCTATTGGCTGTCTTGTGATCTGATCTATTCGCCCTGTGGTACGAACCTGAAATTTGTCTGAGACCATATGACGAAGGCGTTGATAGTATACAGGTCCAAGGAAAATCTCACATTTCATCTCAGTGCCAAAAACTCCACTATATAGAATTTCTGTTCCATGGTAATTAAATCCATAAGAAGCAAGCATGGGTCCCAGTTCATCCACAATGGAATTTGATCTCTCTTTAACTGAGCTTGCAAAAGGCGTTGCATCAATGAACTTCCCTTTCAGACTTCCGGCCTTTGCTGCTATCGACTCTAAGAGCATTGCTATAGTCATTCGTGAAGGAAATGCATGGGGATTAATGATGAGATCTGGCCTCATCCCAGTATTAGCAGAGAATGGCATATCAATATCAGGCCACAACTGCGAACAAACTCCCTTTTGACCATGTCTGCTGCTGAACTTGTCACCAATTATAGGATTTCTCACGCGACGCAGACGAATATTAGCCTTTTGTAGACGATCCTTAAAATTTGTCCCATTGACAGCAACATAATCAATAGCTGCAGGTTCTGAGCCCTTCAGTTTGATAGGCCTTACTGTACCAGTGAGATTGTTACAGACGCTGTAGTACTGCTCATTTGGAAATATGTTCTCTCCAATCCGAGGAAGGCCATCTGATTCGATTGCAGCGGTAGTGTCCCTCGAAAGATTACTCTTGCAAAAGAACTCCGTAACATTATCTCTACTTTTTGCTGATAAATCAATGCACTCAGTCTGGAAAATATGCCCACGGAACATCCCACGATCAACAGCGGATTTATTCAAAATCATGGCATCCTCCATATCATACCCTGTGTATGATAGCACCGCAACAATAGCATTTGTTCCGGATGGGAACTCATCCATGCAATACTTGCTATATGTAGCTGTCCGGACAATTGGTGTCTGAGGGGTCTGTAGATGAAATGCTTTTACATCAGTACGGAATTTTAGAGCTTGGCCACAGAATCCCATGGTTTGCTTTGCCATCTGACATTGGTACATGTTCCGAGGACTTTGATTGTGATCAGACCAAGGTGTCAAATTTGCAACTACACTAAGAATGGCTGTAGGGTGGATTTCTTCATGAGTTGCAGGAAATAATTTGTTTCTTCCACCATCCCCACCATCAGGGCATCGTATTTCCATGAATGCCTGTTCAAATGGTCCAATCAGCTCAATATTTGGCCCTCCATTGGATAGACCTAAGAGACTTCTGACCGGACGAAGAAATCTAGCTGGATTGGTGAAAAGGTATAGTCCAGGATAAGCCCCACCATGGCTTAAGGGTACATAACCCACTTCCAAATCCTCTGGAATCCCTGAATGTGGAAGCAATTTTAAACTTCTAAGATGATTTACTACTTCTTCAATCTTAGCAGAAGCGATGGAACCAACAATGCATCCATCCACATGGACATGTAGGACTTCTGGAGGACCAGTTCGCTCTATCCTCGGCAACAGTTGGGCCATTCCAGCGCCAACCAAACGAGCAATAAGTGACATCTTTATTTTCTGAAAATCTTTAGTTGCCCCTTCTGAGTTGTAAAAGGATGAAATACGGCATGTGGAAGTCATATGGTTCAGTAAACCACAAGGCTCTCCATCAGGTGTATGAACAGGACAGAGGAAACCCCATGACTCTGGAAGCAACTTCCTCACAGATGTCGTACGCATTTTAGCAAAACTAGAACCCCTATGCACAGACCGGAAATGCGAAATATAACGATGAAAGTTGAGCCGTTCAGCATGAATGGTCATCCCATCTCGCTGTGGCAGATCTAGCCCTGATTGTGAATTTACTTTTCCGACCTTTATCATACTCTGAATAGCTTTGCCAACATATGCTGAAGTTTTACTGAGAAATTTCCTGACCTCCTGTGAGTCATTGAGATCAAAGCTTTTATTTTTTGTAGCCTCTTCAACAATTAACCGTTTGGACTTTCTCAACCAATCTTGAAGTCTATCCTTTAGAAAAACTGTTATCAGGTGGCCAGGCAAGAGAACTTCCTGGTACTGTAGAGCATCAGCTTTATCAGGTGACGCAGTTTGATCTACAATCGCATAAAGTTTCTGCAGCATAAATATCAATAAATTAAATTTGTCATGGTTGTTTTGCAGGTGAACAAAAATATAGTCCTTAAGAACTGCCTCAGCAACAGTTTCAAAATCATCTTTCTCAAATCCTTCCATCACAGATCGGAAGTACTTTCCAAGATGCAACAAGCATTCTGTGCGAGTAAAAAGAGACAGGTCTCTGACTTCGTCAAGAATTATTTGTGCCCTTTCACCAATAAGTTGAGTGCTGACAACTCCCTTTCCTCTTTCATAATGATCACTGTAGCAGCATGTCAAGCTTGTAAATATTTCCCGGTCACTAGTATCAATTAGGGCCTTGAGAACAATCCCAACAGGAAGGAGAAATTCTCTGCCTCCCAACCAGAACCCAAGCCTTGCACTGCCATTTAGGAGGTAATACAGCTTTATTGTCACACTGGACTGATCATCTTGGACACATCTTATGATCACTGCTTTGTCAGTGTACCCAGCACCACGATTAACGAAAGAGCCACGGATCAGGCCCATAGGATAGTTACGTTTTTGTAAAATAAGAATCCGTACAAGTCTCTCCATCCCACCACATATGAAGTACCCGCCCATTTCTGTTGCCTCTTCACCATGGAAAATCAATTTTTCAGAATCTGCACCTCTTAGATGGCAAAGCTTTGACATTAACATAATAGGCAAGTAACCAAAATTGAAGGTTTGCCTGACAGCTGGTCCGTCATTACATTGGATGAAAGTATCCACTTTAAATTCCCCATGATACGTCGTCCGTGCCTGCCTGCACTGCTGGGGGTAGAGCGGTGCATCCAACCGACCATCCCTCTTTGGTGGGAACAGATGACCTTTCTCCAAGGATATTCTGAGGGTGGTGGGGGAGTTGGGGACGGTGATCTCCACGGGGCGGATGGACTGAAGCATCTTGTCGAGCCCCTCGTCGATGAAGTAGTCGAACGAGTCGATGTGCGGCCGGTACAGCTCCCGCAGCGCCGCGTACTGGTCCTCCTTGGAGGCCGACGAGCTCTTCCCGGCCGCCATGGCCGCCCGTGCGGGGGGGAGAGGGGGAGGGAGGGA

Explanation	CPC Score
noncoding	-1.09517

Transcript ID	Chromosome	Locus	Ref	Alt
Osa10LNT0075600.1	10	18858232	C	T
Osa10LNT0075600.1	10	18861503	G	A
Osa10LNT0075600.1	10	18857915	G	C
Osa10LNT0075600.1	10	18858483	A	G
Osa10LNT0075600.1	10	18858938	G	A
Osa10LNT0075600.1	10	18859425	A	C
Osa10LNT0075600.1	10	18859579	G	T
Osa10LNT0075600.1	10	18859626	T	C
Osa10LNT0075600.1	10	18860093	A	G
Osa10LNT0075600.1	10	18860241	A	C
Osa10LNT0075600.1	10	18860497	G	A
Osa10LNT0075600.1	10	18862631	T	G
Osa10LNT0075600.1	10	18862695	G	A
Osa10LNT0075600.1	10	18863652	A	G
Osa10LNT0075600.1	10	18864000	A	G
Osa10LNT0075600.1	10	18864103	C	T
Osa10LNT0075600.1	10	18864204	T	C
Osa10LNT0075600.1	10	18864441	G	A
Osa10LNT0075600.1	10	18864708	G	A
Osa10LNT0075600.1	10	18864943	A	G
Osa10LNT0075600.1	10	18865357	G	A
Osa10LNT0075600.1	10	18865497	T	G
Osa10LNT0075600.1	10	18866258	A	G
Osa10LNT0075600.1	10	18866573	G	A
Osa10LNT0075600.1	10	18867498	T	C
Osa10LNT0075600.1	10	18867774	T	C
Osa10LNT0075600.1	10	18867794	A	G
Osa10LNT0075600.1	10	18868983	T	C

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa10LNT0075600.1	osa-miR5529	Translation	4.5	20.662	1	21
Osa10LNT0075600.1	osa-miR159f	Translation	4.5	16.575	1	21
Osa10LNT0075600.1	osa-miR166i-3p	Translation	5.0	20.328	1	21
Osa10LNT0075600.1	osa-miR390-5p	Cleavage	5.0	12.638	1	21
Osa10LNT0075600.1	osa-miR5491	Cleavage	4.5	16.097	1	21
Osa10LNT0075600.1	osa-miR5156	Cleavage	5.0	22.4	1	24

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa10LNT0075600.1	10	qRf-10-2	Physiological trait	Sterility	RM258	RZ811
Osa10LNT0075600.1	10	Rf	Physiological trait	Sterility	nan	nan
Osa10LNT0075600.1	10	ssd10	Morphological trait	Panicle/flower	RG257	RZ583
Osa10LNT0075600.1	10	nan	Physiological trait	Sterility	C701	C16
Osa10LNT0075600.1	10	nan	Resistance or Tolerance	Drought tolerance	RZ892	BCD386

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus