\
RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa10LNT0076000.1

GCCAAATCGGCGGAAGCGAAAAAAAGCAAAAAAAAAATCCCGTCTCGTCTCGTCTTCTTCCTCCTCCGCGATTTCCGTTGCAAAAAAAACCTCGTCTCGTCTCGTCTCTCTTCTTCCTCCTCGACATCGTTTGTGAGGGTTTCGATCTCGAAACCGACAAGGGTTCGCCCCGCGAGTGCATGGCAGTGCGCCTACTGGCTAATGAGGTGTCGGACCTGTGCATCGGCAAGCCGGCGGTGAGGTCGCTCCCGCTCTCCGCCGCCGCCGGGGACCTGGCCGCGGCGCTCAGGAGGGGACCGCAGCAGGCAGCGGGAGG

Coding Potentia
Explanation CPC Score
noncoding -1.00238
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa10LNT0076000.1 10 19053784 A C
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa10LNT0076000.1 osa-miR1437a Translation 4.0 23.546 1 22
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa10LNT0076000.1 10 qRf-10-2 Physiological trait Sterility RM258 RZ811
Osa10LNT0076000.1 10 Rf Physiological trait Sterility nan nan
Osa10LNT0076000.1 10 ssd10 Morphological trait Panicle/flower RG257 RZ583
Osa10LNT0076000.1 10 nan Physiological trait Sterility C701 C16
Osa10LNT0076000.1 10 nan Resistance or Tolerance Drought tolerance RZ892 BCD386
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus