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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa10LNT0077400.1

CAATATCAAACAGCAGAAATACAGTATATTACAAATTTAGATATAACAAGGCACAATTTCCATATCATATTAGAGGGAACATATATAATTAGACAGATATCAGAAAGATGTTATCTCTGTAAAAAAAGAAGGTAAAACTGCAATGCTGGGGTGTGATCAGCAGCTTGCTTATACATCATGCACCCGAGATGCATTTTCAGCAGCGAGCTACATATTAAAGTTATGCAAAAGAAGGCTAATTAACAAACTATCGAAGTCAATCTCTATCAGGTTCTATTAGCACGGCCCCTGAGAACTTCCAAATCCATGTCATCAGGGTCCGTGGCCTGAATCTCAAAGTGCACACCGTCAAGCTCGTGCCGAAATTGGTTCCTCGACACGGCGTATATGGTCTTGGCTCGGATGCGGGAAACAGAAGGGGACCATGAGATGAAGAATATCTTGCTCTTCCTGCAGTTGTCGTCGCTGACGAAATCCAGATCGTAGACGGCGTACCGGCAGTCGTCGGCGGGCAGCGACGCCGTGAAGTCGTCGTAGCTCTCCCCCGGCGCGCCGGTCTTCTCGACGACGATCTCCTCCCGCCTGTCGTCGATCTTGAAAATCACGTAGCGGTGCACCTTCCTCCTCTTCAGCTCCCAGAACGCGCTCTTGCTCTTCTCCGGCACCTCGATCCACGCCGGCGAGCCGCCGCCACCCCATGGCAACACCGCCGCCGCCGCCGCCACCATGTGCCCCGGCGCGCGCGTCACGATCCTGGTCTCGCGGCGGAGGGGGGACTGATCCGAGGGAGGCGCGTGCAAGAAGGCCAAGGATTCCCACGGGCCGAGGGGAGGAGATTGGGTCGGAGGATTATTCTAGTGGGGTTTTTTGGGGTTGGAGGTGGAGTTCAACGAGGGCATTGATGAGATCATGGGGATTCGTGCGGGGCGGCGTCCCGCCGC

Coding Potentia
Explanation CPC Score
noncoding -1.14316
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa10LNT0077400.1 10 20161076 G A
Osa10LNT0077400.1 10 20161085 T C
Osa10LNT0077400.1 10 20162340 G A
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa10LNT0077400.1 osa-miR5534a Translation 4.5 19.098 1 21
Osa10LNT0077400.1 osa-miR5534b Translation 4.5 19.098 1 21
Osa10LNT0077400.1 osa-miR168a-3p Cleavage 5.0 20.031 1 24
Osa10LNT0077400.1 osa-miR444a-5p Cleavage 5.0 19.77 1 21
Osa10LNT0077400.1 osa-miR5485 Translation 4.5 18.027 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa10LNT0077400.1 10 nan Morphological trait Seed RZ811 RG561
Osa10LNT0077400.1 10 qRf-10 Physiological trait Sterility RZ811 RG561
Osa10LNT0077400.1 10 Rf1 Physiological trait Sterility nan nan
Osa10LNT0077400.1 10 nan Morphological trait Panicle/flower RM171 RM333
Osa10LNT0077400.1 10 nan Physiological trait Sterility RZ811 RG561
Osa10LNT0077400.1 10 nan Physiological trait Sterility C701 C16
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus