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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa10LNT0078900.1

ATACACTTTTCCAGCTTGATAGCCACCCCCTTTTATTATTGCCGAAATCTAGTTTCGACAAGATGTAATACTAGAATCATCAAAACTTCCACTGGGAACTGTATAAACAACCTTAAGCTTCATTTCCTCAATCACCTTATCGACTTCCTTGTTGAACTGGACCGATACAAAAATGGCATATAGTTGGTGGGTCAGTAGTCATGTCATTGTAACAATAATGCATCACTAATAAAGCTTGCAAATCATCTATTTGCATTTTATGCTCACAGTATTGGGGGGAATCTCATCCATGTCAGTACTGGTAGCTACTAGCTTGGTGCTCTGGATCAAGAATTTATCCTTGCATTGCATATTTGGTGGGCACTATTTATGTGCCTGGAGCGTAACTACATCACCCAAGAACAATGCAGATATCCAAATATCAAGACCAAACAAGGAGCCTGAAGAGAGCCATGGCTTGGCATACCATAAAATGGCCAAATTAGGAACATGTATTCCCTCCGTCCCAGAATAAATTAATCTAATACAAGATGTGATATATACTAGTACTATGAATTTGGACAAGTACTGGGATATGTCACATCTCGTATTAGATTAACTTATTATGCGGCGAAGGTACTATTTACTTGTTATTGTGCAAGAATCCCATGGCTGGACAATGCTCGTGTTCGGCCGGACAAAATACTTCCTCGGTAATGTCGTCTTGACATGAAACAAACTTTCATCAAGCCTTCTCGCCAAGTTTTAGAAAATATTGGTCATGAAATGGAAGGCCATGGACCTTGAATGCAGCATGATGCTCGCTGTTGTTCACCACCTTGAGATTGCAATAGCACCGCTTATCCAGCTCAAATAGGAAAGTGAGATCCTCAGGGTAAATGGAGATCAGCGTTCCGCTGCCGCCCATTGCCACACCTTTCGCTTTGTTCAGAGTAAAAATCCAACCTTTCTTTCCAAGAACTGAGTTGCACTGAAACAAACTGAAGAAAAAAGAGGAACCAACGATTTGTTTGTAACATAAATTGGAAGGGCAGGAGGAGATAGTAGTAGGGGAGAGAGAGAGAGAGAGAGAGACGGATGTGTTTGCTTTGCTAT

Coding Potentia
Explanation CPC Score
noncoding -1.14921
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa10LNT0078900.1 10 21504816 G A
Osa10LNT0078900.1 10 21505846 A G
Osa10LNT0078900.1 10 21505202 T C
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa10LNT0078900.1 osa-miR418 Cleavage 5.0 18.16 1 21
Osa10LNT0078900.1 osa-miR418 Cleavage 4.5 10.336 1 21
Osa10LNT0078900.1 osa-miR418 Translation 5.0 21.188 1 21
Osa10LNT0078900.1 osa-miR815a Cleavage 3.5 10.476 1 21
Osa10LNT0078900.1 osa-miR815b Cleavage 3.5 10.476 1 21
Osa10LNT0078900.1 osa-miR815c Cleavage 3.5 10.476 1 21
Osa10LNT0078900.1 osa-miR1436 Cleavage 4.0 18.31 1 21
Osa10LNT0078900.1 osa-miR1439 Cleavage 3.5 16.044 1 21
Osa10LNT0078900.1 osa-miR3979-5p Cleavage 5.0 8.926 1 20
Osa10LNT0078900.1 osa-miR2873b Translation 4.5 14.214 1 21
Osa10LNT0078900.1 osa-miR5161 Translation 5.0 13.407 1 20
Osa10LNT0078900.1 osa-miR5338 Translation 4.5 7.929 1 21
Osa10LNT0078900.1 osa-miR5490 Cleavage 2.5 18.508 1 21
Osa10LNT0078900.1 osa-miR2095-3p Translation 4.0 16.228 1 20
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa10LNT0078900.1 10 nan Morphological trait Panicle/flower RM171 RM333
Osa10LNT0078900.1 10 qRf-10 Physiological trait Sterility RZ811 RG561
Osa10LNT0078900.1 10 nan Physiological trait Sterility RZ811 RG561
Osa10LNT0078900.1 10 nan Morphological trait Seed RZ811 RG561
Osa10LNT0078900.1 10 nan Physiological trait Sterility C701 C16
Osa10LNT0078900.1 10 Rf1 Physiological trait Sterility nan nan
Osa10LNT0078900.1 10 nan Resistance or Tolerance Drought tolerance C809 R716
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus