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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa10LNT0079500.1

AGCAGGTCATCCAACAACAATGTTCAGAAGCGGAACACAAGTCGTGGACTCAAGAATATAAATAATTTGAACTTAGATCACCTGAAAGATGCTGGAGAAGTGGGCCAGAACCTTAGGTCCCTTGAATCGCTAGGATGGACATGAAGATACAGCATGTCTGCCCAGTCAAGTTTCTGGTCCTCAGAGAAAACAAAGCTCTGTCCATAGCCTTCTAGGCTATTCGGTAGCTGTGTGTACTCCTTCTTGGTGTCCAGTGGCTGGCTAAAGAAATCAACAATGTCTCTCTTCAGGTTTGCAATCACTTCATCTGGCACTCCATGGTTAATGAGCTGTAGTTTATTCCAAAAGTAAATGTTTCCATTATACTAGTTGCACAGCTCAAACTGAGCTAGAGCTACCTTACAGGACATGAATTTATTCATTTTCTGCCCACAACTTTATTTGATTATCTGTAGCGTCTTTAATCAATTCAAACATTTGTATATACAGTATGCATTTGCAAATAGGTATCTGTTGCTTTCCGAAGATGAAATGCCAAGAACCTAAAGTTACATACCAGAAAGAACCCCCAATACTGGCAGGCAGATCTCAGCTTCACACACTCCTCTTCTGATGATTGCGGACAAAGCAATTTCTTGAGATCGATGATCGGAATCGCCATGTCACCTTGGTAGTTGTTGATGACCTCCTCAGAACTAGCCTCTGGTCTGATGTACCTTTCAGGTATGTGTTCATCTGGATCATTGCAAATTTCTGCAAGCGCCTGCACATTAGGCACTGGGAGAGAACCAACGGATCTTGCTCCCGCCATTGCAATTCCCAGTTTCTGCACTAAGTGTTTTCTTTTCTTTTCCTTTTTTGGCAA

Coding Potentia
Explanation CPC Score
noncoding -1.22183
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa10LNT0079500.1 10 21989317 T G
Osa10LNT0079500.1 10 21990277 T C
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa10LNT0079500.1 osa-miR396a-3p Cleavage 4.5 13.107 1 20
Osa10LNT0079500.1 osa-miR396b-3p Cleavage 4.5 13.107 1 20
Osa10LNT0079500.1 osa-miR5509 Translation 5.0 12.521 1 21
Osa10LNT0079500.1 osa-miR5509 Translation 5.0 13.386 1 21
Osa10LNT0079500.1 osa-miR5521 Translation 4.5 9.629 1 21
Osa10LNT0079500.1 osa-miR167h-3p Cleavage 4.5 21.122 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa10LNT0079500.1 10 nan Morphological trait Panicle/flower RM171 RM333
Osa10LNT0079500.1 10 Qbph10 Resistance or Tolerance Insect resistance RM484 RM496
Osa10LNT0079500.1 10 qRf-10 Physiological trait Sterility RZ811 RG561
Osa10LNT0079500.1 10 nan Morphological trait Seed RZ811 RG561
Osa10LNT0079500.1 10 Rf1 Physiological trait Sterility nan nan
Osa10LNT0079500.1 10 nan Physiological trait Sterility RZ811 RG561
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus