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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa10LNT0080900.1

GCCTCGCAGCTAAGGGTCAACACACTGAGAAAAAAACACACATCAAAATCCATTTCTGATCCACAAGACCACATTATAATTAAGAAAAAAAGGAAGTTACTGGAGTAATAAGCAAGGATCATTCATGCCCTCTTCTAGCATCCATATTTACAGATGAACTGAACAAAGTAGCACTAATCCTGGTACCACCAGTTAGTAGCAGCCATCACAAAACTTAAGCACCACCAGCTACTTATTATCATCACTGCTAATCCACTAGGAGTATTAGCTACAAGTCTGCTCAAAGACATCTAAAATTTGAAACATCTCAAAATGAAAAAAAAAAGACTATATAGAAGGTTGAACACAAGAGAGAGAGGGAGGGGGTGGTCACTAATTAAAGATGTATACATATCCTGTCTGTATTTTTAATGTGTTCCTAGTAATGGTAATGGAGCAATTAGCAATGGAAAAGCTAGTGCTTTTGTACCCTTCCTTTTCTTCATCTTCCTCCTTTCCTTTGTGCAAAGCTAATGGCATCCACCTCGAGAAGCACCACCAAAAGGCAACAATGGTAATGGCAATGGGCAAAGGCCGACGAGGTGGCGGCCGCTTTGCAATGCGATTCCCAATTGCGCACGCGCTGGATTCCTGCAGGTGAAGTTGCTGTTGGTTGGCAATGGCTAGTACTCGACGATGAGGCTGCCGAATGGCGCGCGGTGTGGAATGCCCTTGCGGCGCTTGGGCGGCAGGGTGGGCGGCGGCGGCGGGGTGGACGGCGTGAAGCTCCTCTTGGCAGGGGAGGTGGAGTTGTCGGAGTCGGAGGTGGAGGCCATGGCGTGGGCGTGGCGTAGTCTCTTCCTCCTGGCGGCGGTGGCGGTGGCGGTGGCGGCGGCGGTGGCGGCGTGGGGGGAGCAGCCGACGACCTTGCAGCCGAGGGAGCAGAAGCGGAAGTTGTCGAGGAGGCTGCGGCTGCAGACCTCGCAGATGTTGGCGACGGCGCCCTTGCCGGCCTTGTGCTGGGGGCGCTCGTTGAGGAACACCACGCGGGCGCTGTTGATGACGTACGTCTGCACCCCGCCGATGTCCATGAACCTCTGGATGTCCGACACCCTGATCACGTCGTGGTACGACGACCGCCGGATCTGGATGGTGTGGTGGTCGCGGTGGTTGTGGGCGAGGCAGAGGGAGCAGAGCGCGGCGGCTCGTGGTCGATGGCCATCGATCGATCAATCAATCAATCAGTCCTCTCCTCTCCGAATGCAACTAGGCAAAGGGTAGGAAGAAGAAGAAGAGAGAGCGGAGGCGGCGGTGGATGGATGGAATGGCAGAAGAAGAAGCAAAAGGAATGAAT

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.257286
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa10LNT0080900.1 10 22829270 A T
Osa10LNT0080900.1 10 22830860 T A
Osa10LNT0080900.1 10 22830879 C T
Osa10LNT0080900.1 10 22830971 A C
Osa10LNT0080900.1 10 22830801 A C
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa10LNT0080900.1 osa-miR2868 Cleavage 4.0 6.512 1 20
Osa10LNT0080900.1 osa-miR2868 Cleavage 5.0 17.399 1 20
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa10LNT0080900.1 10 Qbph10 Resistance or Tolerance Insect resistance RM484 RM496
Osa10LNT0080900.1 10 nan Resistance or Tolerance Drought tolerance RM496 RM228
Osa10LNT0080900.1 10 nan Morphological trait Panicle/flower RM171 RM333
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus