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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Sequence

>Osa11LNT0084600.1

GGTTCCAACTTCCAAATTTGTTCAAAAACCTTCTGCGTACAGTACAAAAATGGATATGTCTGCTCAAGATTTATTTAGGTAATACTGTGACCAAAAGAACCCCACAAGTCACGACTCACAATCAACTCTGCGGTTCGACCTACAAGACATAGATTTCAAGCCGTTTTGTGGAAGAGATCCTGGAGATCAAGTATGTCAGCAAGAACTCCAGCTGCAGTGGTATCATTGCCAGCTCCAGCGCCCTGAATCACCAGAGGGGCGCTCTCGTAGCATCTGCTGTATATCTCCACCCTGCTCACACTCGTAGGCTCTTTTGTTTTCACCACATTGTCACTTCCTCTCAACCTTCCCAGTGCAGAGTTTTTCGGGAGTTCTTCAAGGCCCACTTGGCACCCTGTGCTTTCAATCTTACAGACATAGCGAAGAACATTTCCTTTCAAAGATGCTGCCTTTACTCTTTCTTCAATGCTTTTATCAAGCTGTACTAAACCACTTTCAAGGAAGTCCTTTGTGGACATTGCATCAGGTCCTAATTCACTGGGGTATAAACTCTCAACATTAATATTCTCCATGCTAATCTGTTGCCCCAGAAGCCTAGCTAAGATCAATGCCTTTCTAGCTACGTCCATCCCACTGAGATCATCACGTGGATCTGGTTCTGTATAGCCAAGAGACTTGGCAGTTTTCACAACTTCACTAAATTTCTTTCCATCCTCCAGCTCACTCATCACATAACCAAGTGTACCACTCAGACTGCCAACAATACGAGAAACTGGATCTCCAGAGGCAATAATACGAGTCACAGAAGCTATTACAGGCAGACTGGCTCCAACAGTAGATTCAAATCTTATGCGACGGAAGTTGGAGACCAACTTTTCGAAATCCTCATAAGCACAAGTAAGCGGTTTCTTGTTTGCCAATACAACACAACATCCACAATCCACGGCATCCTTTAGCATGCCAACAGTATCATAAGTTGCAGAACAATCAACTAGTACAAGACCAGTTGTTTTCCCTAGAACGCTGGCAGTGTCAATGACTTTCCTCCTAGCCTCAGTGTTGTTGAATAGCTGACATTGCCCTCGAGCGAGCAGGGAAGATAGGGGCGAGCCGGCGGACTTGGCGGCGCAGAGATCAGCGAGGAGCGCGTCGTCGAAGCCGTTGGAGTGGAGGTCGTCGGCGACGAGCAGAGAGGAGCTGTCGGCGACGCCGAGCACCCGGATGGCGACGCCCTGGTTGGCGTGGAGCGGGCGGCAGGAGACGATGTGGCGGAGAAGGTGGCGGCCGACGCCGCCGCAGCCGAGGAGGACGACGGGGAGGACCGACCTCACCGGCGCCGCCATTTGGGTGCTTGACAGCTTCACCTTCAGGCTACACCATTTTTGGTTTCTTCGGCCTGTTGTTCAATCGTCTATTCGGC

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.693935
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa11LNT0084600.1 11 1329493 T G
Osa11LNT0084600.1 11 1332047 C T
Osa11LNT0084600.1 11 1332648 A T
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa11LNT0084600.1 osa-miR2055 Translation 5.0 14.821 1 21
Osa11LNT0084600.1 osa-miR5150-3p Translation 5.0 23.014 1 24
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa11LNT0084600.1 11 nan Morphological trait Panicle/flower RM286 RM332
Osa11LNT0084600.1 11 qDLR11 Resistance or Tolerance Other soil stress tolerance RM2596 RM286
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus