>Osa11LNT0085000.1

CCGGCAATAATTTCATTCCCAAGCTGATGTCACTTACAGAGTTTTACTAGTTACAATGTAGTACTCTATACATTATACTAGTAGAATGCTACTCGGTATTACATGTAGGCTGGCCATGAAAAACCTAGCCATCAATTTGGCCACCATTTACCCCCAACTATATATATTCCTTTCGCTGAAATGCTGCAATTGCATATCTGGCACCTACTATACAAGCATAAGGAGGTACCAACCCTCACTTCTATCTATTGCTCCTGGGACATCCAGATGAGCATCATGTTATATGCCTTCGCTTCACAGCCGGCTGCAGGGCTCATGAAATTGCCAACATCTGAAGTTCTGAAGAATCTAGATCTGTAGTATACCTGAACAGTCTAATTTGTATCATGCTGCTGTGGCACGGCCAGAAAGGGTTTGAAAGTGAGGATAAGTCCAAGCAACTCGAAGAGATTCAAAAGAAAGAACACCATCTGATCACCTGGAAGGAAGGAAGCCTGCTGGCGTTTTTGTGCCCACGAGAACACAATGCCCGCCCCTGCTGGAGCCACTGCCTTAAAAAAGGACATTCCTGTCATTGCCAAGCCATTAGCAGCCCCTCGTTGGTCTTGAGGCACAGCATTATTTTGTAGGATGAAACAGCCTGTAATGATGGTAACACCAAGATTATTTTTTATAACTGACGCAATGTTCAGTATGATCGTTAATCCAGGTCCCGATAGGTATGTCATATATGGATATGCAAAGAGAATAGGTATGCACAGAATAGCTGCAATTCGAGAAGCCTTAATATGGCCTATAACCTTGTTGATACGAGGATAAATGAAGAGTTGATACACAAGAAGACTGGCACCTGTGATTGCAAGCACTTGACCCACATCCTCAGATGACAAACTCAGCCCACCGTACTTCCTGTCACTTTCTGCCCATAGAGAGAATATCTCTGTATAAGCCATATCATGAAAGGAGAAGACACAATAAAGAATTATGGAGGACATCAAGGGCCAATTGCTCAATAAGCTCTTCTTGCAGTCCAAACTACCATTTTGGTCAGCCTTTTCTTCTGGATCAATCAAATGGCTCTCCAAAGCTTCAACAGTTTGAGATCTATTTGCATCAGCTTTATGCTTGTGTAATGTCTCCGGCATCCATATGCAGCCTATGAGAACAACAGCAGCAAAGACTGATATGCACAAGCAGGGTAAGAAATATGGGAACCTTGCAAACAGTGAGTCAGGGGAAAAGACATTGGGAAATTTCTCTGCAGGCTGTGAAAGGTAGCCTCCAATAGCTGGACCAATTATAAGACCTATTCCCCATGCCGTACTAACAAGTGACAATGCAAGAGCTTCATGTTCAGGTCGGCAAACTTCAATAGCATAGGCCTTTATTGGCCCAAGTAAACCATTTAAAGCACCAAGAAGGAATCTTGTAGCTATTGCCATCCAATAGGTGAAACTAAGCCCAAATAGCGTATTAAATATGACCACCGCGAAAATGCCAAACACAACAACTGGTTTCCTCCCAATACGATCTGCTGCTATTCCCCAAATAGTTGAAGTCAAACATCGACCGAACATAAACGAAGCACCCACAAAGCCGGCATAGAACCCAATATCTTCTGTCCTTTTTGCAACATGCAAGTCTCTTATCATGAAGTACAAGAAGGGGAACAATGATGATATTGGTAAAGCTGTGCAGAGTGTGACGATCCAGACGAAGAGGAAGCTCCCGTATGGGATGCCGGAGCTCGCGGCCTTCCGCCGGTCGACGACGCACCCGGGGCACCCCTCAATGCAGGACCCATCGCCCTCGCCGGTGCCGGTGCTGCCCTTCTTCTCCAGCAGCGGAGCCGCCGCCTCCGCCTGCCGCCGGCGTCCATGGTCGCCCATCAATTCACCAATCTCGCTCGCTGTGTCGATCTCTCTGACTCGATAGACCTTGGCTCTGTCTGAATGGCTGTATTGTATTGAATAACTGATGGGTAGTTGTTGAGATCGATTAACTACGCCTATATATTGCCTCTAGGAGCAGAGCAGAAAACGCATGGAACAGAAAAGCCACGGGAAGAAGAGTAGAAGACGAAACAGGCTTTCCGTTGTCCAAATAGTATATGATTGTAAG

Explanation	CPC Score
noncoding	-1.13901

Transcript ID	Chromosome	Locus	Ref	Alt
Osa11LNT0085000.1	11	1667652	C	T
Osa11LNT0085000.1	11	1658042	T	C
Osa11LNT0085000.1	11	1659611	T	C
Osa11LNT0085000.1	11	1659531	C	T
Osa11LNT0085000.1	11	1660685	C	T
Osa11LNT0085000.1	11	1661921	C	T
Osa11LNT0085000.1	11	1664001	G	A
Osa11LNT0085000.1	11	1665152	T	A
Osa11LNT0085000.1	11	1665381	T	C
Osa11LNT0085000.1	11	1666211	A	G
Osa11LNT0085000.1	11	1667269	G	A
Osa11LNT0085000.1	11	1668018	G	C

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts
Osa11LNT0085000.1	DTM_#DNAt_MULE_japo_Os0103	Chr11	-	1662715	1662869	154

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa11LNT0085000.1	osa-miR160a-5p	Translation	5.0	13.854	1	21
Osa11LNT0085000.1	osa-miR160b-5p	Translation	5.0	13.854	1	21
Osa11LNT0085000.1	osa-miR160c-5p	Translation	5.0	13.854	1	21
Osa11LNT0085000.1	osa-miR160d-5p	Translation	5.0	13.854	1	21
Osa11LNT0085000.1	osa-miR167c-3p	Cleavage	4.5	18.491	1	23
Osa11LNT0085000.1	osa-miR159a.2	Cleavage	5.0	15.9	1	21
Osa11LNT0085000.1	osa-miR319a-3p	Translation	4.5	15.837	1	21
Osa11LNT0085000.1	osa-miR319a-3p.2-3p	Translation	5.0	21.889	1	20
Osa11LNT0085000.1	osa-miR319b	Translation	5.0	21.889	1	20
Osa11LNT0085000.1	osa-miR160e-5p	Translation	5.0	13.854	1	21
Osa11LNT0085000.1	osa-miR171i-5p	Translation	4.5	16.478	1	21
Osa11LNT0085000.1	osa-miR815a	Translation	4.0	16.939	1	21
Osa11LNT0085000.1	osa-miR815b	Translation	4.0	16.939	1	21
Osa11LNT0085000.1	osa-miR815c	Translation	4.0	16.939	1	21
Osa11LNT0085000.1	osa-miR1432-3p	Translation	4.5	17.144	1	21
Osa11LNT0085000.1	osa-miR2097-3p	Cleavage	5.0	11.44	1	22
Osa11LNT0085000.1	osa-miR2100-3p	Cleavage	5.0	16.992	1	22
Osa11LNT0085000.1	osa-miR5486	Cleavage	4.5	20.918	1	21

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa11LNT0085000.1	11	qDLR11	Resistance or Tolerance	Other soil stress tolerance	RM2596	RM286
Osa11LNT0085000.1	11	nan	Morphological trait	Panicle/flower	RM286	RM332

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus