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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa11LNT0085600.1

ACTGTCCAGATATCATCATGTGCTCTTTCACAATTTCCATCAGTACTCATGGATAGTATCCATTGCTCTTTGAGGCAGTTTACATATGTGTAAAATCACCAACTTGATTAGTGTCATGTATTAATATGAAGATTGAAGATATCAAATACATAATAGAGAGTTAGAGACATGATCTAGCAGTAAACTATGAAGACAATGTTTTGATCTAGCTAGGTAAGCTTCATATCTTAATTTTTTGAGTGCTTAGAAATACACTGTTTTCTTCTTTTGGAACAGTGATGGCTGCTGAGCTTGTTCATGCTGCTAGAAGTGAAAATGCTGGTGAACCTACTTTACATTTCAACTCTGACATAATTCGCATGTTCAACAATGGCGATCCTCGTACTGCAGCTCTTGTCCGACTATGATATGCATTCTACATCACCATTGATGTTGCAGGAAACAGCCTGTCCAGTAGGGTATAAACCCCTCCACCCAGTAGAAATGCACCACTGATTGGGTTTATCCATGCAGAATATCTCCTGAAGGAAAGCAAACTCTGCAGTGCTCCAGCAAAAGAAGCTGCAATGAGAAGAGGTGCAACATAGCCAGTTGTATAAGTCAATAACAAACTTCCCCCAACAATCGGATCTCTTGAAGTGGCAACATATCCCAGAAGGGTAGCAAGAACAGGTGTACTGCAAGGTGATGCTGCTAATGCAAACGTAAGTCCGGCAAGGTATGCTTGTACACTGGAAGGGAGGTTAGCTGCAGCAGCTCGAGGGTCATAATCGCTGAAAAATGAGGGAAGTTGTAGCTCAATTACCTCAAGAAGGTTCAATCCCATGATAACTGCTAACCCTGAAGCAGCCACTGGAAGTCCTTGTCCTACCTGCCCATAGGCCTTTCCAGCAAAAGAAGCAGCAACACCAAGGATGGCTAAGGTTGTTGCCAGTCCTAATGAAAAAGCAACTGAATTTCCAACAACCTCAGATCGATCTTTGCCCGAGCCAAAAGCACCTATATATCCTAGAGTCAATGGCAGAACACTGAGTGTACAAGGAGACAAACTAGTTACAAGTCCAGCACCGAAAATTACAGCCAAGCTAGTGAAACTAAGAGCAGACAGCTGATCCTGAACAGCTTCGTTGGCTTGCTGACCCGCTGAATATAGCAAATTTCCAAACCAATCTCCAACGCTAAGGTCAGCCAAAGCAAGTCCAGATGACCCTAGCAGAGAATCCCCAATTTCTGTAGCATTTGCAGCGCCAGCAGCAACCAGACTCCCCACCGCCACGGTCGCCAGCAGCATGGGGCGCTGGCGGACGAGAGAGCACCTCGCCGCGGCCTCCAATCTCGCTCCACGAATCGCTGCCTTGGAAACCGAGCTCCCGCGCTCGCGGGGCACACCCACGAGCACACCCGTACCAGGGGACGAGGAGGTGGAGGGCTTGGAAGCAGAAACCTGCGCCGGGAGGCATGGGCGGCAGGTGGAGGTGGTGCTACTGACGGGGCGCGCGGCCATGGCGACGCAGAGCATGGAGGAGTGGAGGGAGAAGAGGGAGAAGAG

Coding Potentia
Explanation CPC Score
noncoding -1.02331
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa11LNT0085600.1 11 1881447 G T
Osa11LNT0085600.1 11 1881652 T C
Osa11LNT0085600.1 11 1883254 T G
Osa11LNT0085600.1 11 1883806 C A
Osa11LNT0085600.1 11 1884500 A T
Osa11LNT0085600.1 11 1884909 A G
Osa11LNT0085600.1 11 1885648 A G
Osa11LNT0085600.1 11 1886446 G A
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa11LNT0085600.1 osa-miR5820 Cleavage 4.0 12.744 1 21
Osa11LNT0085600.1 osa-miR531c Cleavage 3.5 20.108 1 24
Osa11LNT0085600.1 osa-miR531a Cleavage 3.5 20.108 1 24
Osa11LNT0085600.1 osa-miR531b Cleavage 3.5 20.108 1 20
Osa11LNT0085600.1 osa-miR1853-3p Cleavage 4.0 17.243 1 22
Osa11LNT0085600.1 osa-miR2093-3p Translation 5.0 13.278 1 20
Osa11LNT0085600.1 osa-miR2865 Translation 5.0 21.992 1 22
Osa11LNT0085600.1 osa-miR2874 Translation 4.0 16.978 1 24
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa11LNT0085600.1 11 nan Morphological trait Panicle/flower RM286 RM332
Osa11LNT0085600.1 11 qDLR11 Resistance or Tolerance Other soil stress tolerance RM2596 RM286
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus