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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa11LNT0086200.1

ACAGATCAGCTTTCAATTAATTATACAAATTTGGTTATACAAGCTAATTATACAATTGTTAAAGGTTGAAAAGATCCAAACTAAAATATCCTTATTTGAAAATACAAGAAAAATCTAAAGTGCTAAACTACTAAACTCCTAAGCTCTTCAACTACTAAAACTACAGCTAATAAACTCCAAAGAATTCAAATAACTCCACAGGCAAAAGCTCGAGTGTAGACTAGCCTAGATAAACTTGTCGTTGCCGTAAAATCTCGCTTCCTTCCGATCTCCTTGTTAGCACGTTTCCTCTATATGTCAAATTATGCAAGGGTGAGTACTTATGTACTCAACAAGACATATTATAAATAATTAAAGGTGAGTAGATATGAATAAATAAACAAAAATAAAGTAAAGGAATAATAAAAACCATAAATCATCTTTATCCTCAACTCTTTAATTTTAAAACTACTTATACTTCAGGAGTAGGAATCACCCTGATGACACAACTGCAGAACCGGGAGTATGGCACATTCGAATGATTTAATTCACCTCTGCAGAGACTGTCCAGCTTTACCCACACGATGTCAACAATTTGCAAGGCTAAGGACACCAGAGCCGTTCGAAGGTCCCACTTACTACTAGTTACTACACAGTGGGGTCTTGGTTCATCATAGTGGTCGAACTCTTGCCAGGCCTAGGCAAGGTATCTATATCGTCACACTTTCATGAATCCCACTGTTGTGAAACACTGCCGCCCAAACTCCTTACGCAAGTTCACCCCAAAACCGCTCATAGAGCCACCCAACAGTCTTTCATATAGTGGGACAATGTACTACGCTAAGTCCAATTACTTGATTGTGTGGATGGACGCAACTATGTCATTTCCATGGTATAAGGGGGTAATTATAATCCGGTTAAACCACCCAAAACTTTCCAAACTCCCCACACCAACATCACAAACTTCATCAACATTCATAATCACAGCATTTATAATCTCAACTCATAAATGCCCATTTTAATTGGATTCCTAAGTTTGTAAAGTTGTTTGGAATAGTAAATCACATAAAATGATAACCAATGCTTCTTTCTATGTTCTCATGCAATCATGCTTAAAAGCATTTAACATCTACCCATGAGATGTTAAAAGAGTAAGGTATTATGCATCAAATTAAATATGAAGATCATATCAAGTTTTCTATATGATCAAATTTTAATTATGTCTTTCCTTGCACCTTAAGATTTCTTGCGGCTTTAGCGTAGCCATCTGGGTCCACGTCAGCTCCTTGGATGCTGATAAAACTTGCTGTACGGTTGTGCAGCGGGGCCCACTGTCATATGTCTCTTCTTCTTCCTCCCGTTCTTCTCTCCTTCCTTCTGTTTCTTCTCCCGAGCAACAACAGAGGGGAAGAGGGCACAGGGCACCGGTGCTTCGGTGGTTTAATGGCCTCGACGGCGGCGGACAAGCGTGTTCCCGCTCGCTATGCATCCGGGGAGGTCGGTGGAAGGCATAGGGAGTAAATAGAATGGCCGGAACGGCGGCAGCAAGAGCTCAGCTCTGGCCGGCTATGGTGGTGCCGGTAGTGCTTGTGGCAGTGGCTAAAGGAGAGGGGAAATAGGAAAAAATGGAATCACCTCGGCGAGGCGGAGTTGGTGGCGCAAGGGTTTGGCTTTCGAAGCTCCGGTGAGGGAGATCGGCCGACGACGGCGACGGCCGGACATGGCAAGAGAGAGAAAGATGGAGCTCTG

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.240648
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa11LNT0086200.1 11 2149333 T C
Osa11LNT0086200.1 11 2149623 A T
Osa11LNT0086200.1 11 2150246 G T
Osa11LNT0086200.1 11 2150574 A G
Osa11LNT0086200.1 11 2150718 A G
Osa11LNT0086200.1 11 2151009 A G
Osa11LNT0086200.1 11 2151118 T A
Osa11LNT0086200.1 11 2150558 A G
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa11LNT0086200.1 osa-miR5788 Translation 3.5 15.846 1 21
Osa11LNT0086200.1 osa-miR5337b Cleavage 4.5 21.857 1 21
Osa11LNT0086200.1 osa-miR166h-5p Translation 4.0 24.472 1 21
Osa11LNT0086200.1 osa-miR818a Cleavage 3.5 20.148 1 22
Osa11LNT0086200.1 osa-miR818b Cleavage 3.5 20.148 1 22
Osa11LNT0086200.1 osa-miR818c Cleavage 3.5 20.148 1 22
Osa11LNT0086200.1 osa-miR818d Cleavage 3.5 20.148 1 22
Osa11LNT0086200.1 osa-miR818e Cleavage 3.5 20.148 1 22
Osa11LNT0086200.1 osa-miR1435 Cleavage 5.0 21.631 1 20
Osa11LNT0086200.1 osa-miR2092-5p Translation 4.5 17.026 1 21
Osa11LNT0086200.1 osa-miR5152-5p Cleavage 5.0 13.467 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa11LNT0086200.1 11 qDLR11 Resistance or Tolerance Other soil stress tolerance RM2596 RM286
Osa11LNT0086200.1 11 nan Morphological trait Panicle/flower RM286 RM332
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus