>Osa11LNT0091500.3

GGCATTCATACCTCTCACATTCCAATTGAACAGGGCTACATTATCTTGTGACATAATCTAAAAAGCATCTAAACACACTCCGCATAGCAGAAACACAACCAGGTAAACTGGAAGAAACACAGCTAGCATTGAGGTGGATATGCTTTAAAAGGCCGGGTGAGACAGAGCCGAAACGGGGCTCCGATAGGTGACAGATACACATTTCAGGATCACTAACAAGCAGACGAAACAGAGTACATCGAAAGACATGGCAGCTACACTCGGGGGACATCGGCCTTGGCAGTGGAATCATTGGAGACAAAATCTGCTTCGCTTGAACTGTAAGCCGGTCGGAGGCAGTCACAGGGGCGCCACTGCCGCATTTTTCTTCAAATTCTTCATCCCGATCGTCTTGCACCCTCCCTTTTCAACCAAGTCGGCGATTATCTTCAGTGATGCTGGCGAGAGAGGCTTCTTGTACCGCTTTGCACGGGAAGGCTTCCGTGCATTGACGTCGGGGGCTGGCAGGAGAGGCGGCTGGACTGGAGTTGCAAGGCCGTTGATGAAGCTGTCAATCTTCATTGCCTTGCACGCAGAAGGTGTGTCTGCTCCTGCATGTCCTGTAGAAGTAGGCACAAAAACAGGGGAAGAGACACGAGGGGAGGAAGTATCTGGAGAATAGATGGAATGATGCACGGCTGCTTCATGAAGCATTGGGTCGAGATGGCTCTCCAAAATGTCGAGGATGTCCACACGCCCCTCGCTTGGCTCGCGGGAACGATGACCTCGGTATCTGTGATCAGAGCGCTCTCTGTCCCGCGATCTGCCCCTCCTTTCTTGGTCACGTCGCTGGGTGTCTCGCCGGTTCGGATCTCTGCTTCGGCTGTGGGAGCGCCCGCTCAGCCGATCCCAGAGGGAGCGGCTTCTATACCGACCCCTGGAAGGATCGTTTCCATCTTCGTCTTCATCATCCGGGCCACGAGCTGGGTCCGGCTCAGCCCTGCAGGGAAGCGGGTACTCTCTGAAGTTGATGCCGTCGTCCTGGACTTTATAGTCCCACTTGTACGCCCAGGCTTTGCGAGCGTGAAGATCTTCGAGGGTGTCCACATGAATGAGGACGTCGTAGGACCAGCCCTTCTTTGGCTCAGAAGGAGGAGGATTGCGGAGTGGCTCCAGCTCGGGGAGGGGGATGTCAGTGGGGAGGCCTTCCTTGTCAGCAGACGTGATGGCAAAGGAACCACCCCGAGGGATGGCTCTCGGCTCATCTGTCCAAACCCACATGTCATATGTGCGGTTGTAATTGCCACGCCTGGAGTACTCCTCCACATAGTGGATAGAACACTTGCGACCGATCACCTTTGCCGCCGTTTCATCAGTACGGGCATGCATTGGCACACCTTCGATACAGAGGCGAGCACGGTAGCGATAGCGAACTGGGACACCATGGAGACTTTCATCCCAAGGACGAAAGAGGAAGACTCGGCCAGAGGCCGTAGCAAGCCTTGGTTGGCGGAGGATGGCATCGCGATCACTTTGGTTGGAGCAGGTAACAAAGAAATCTTCGGGGTGGAATTTGGTGAATTGGATGTCAGCTCTTCTAATGTGGAAAGCAGAACGAACATCGTCAGCGAAGACATTAAGCTCAACTTTGTCACCCAGAGCCCCAACTTGCCAGGCAACTAAGGAGCGAGCAGAGAAACGTTCTCTGCGCCTCTCAATCTCGCCAGTGGCTGAGACGACCACCGAGTCAAGGAGAGGACGGGCAGTGAGGTCGTCCATGGGGATGGGCGAAGAAGCTGAGAAGGATTTTGGGGGAAAGCGTAGAGGACCAAGAGCTGGGAATTTTTTTGTGGATAGAACGGGTGGAGTGGGCGAGCTCTTATAGCCCGAACGCTTGAGGCAGGAGGAGGCTAAGTGTCCAGATTTCAGACAGAACCAACATCGAATAGGCTCTGTGCAGACAGACACTTGATGCTGGGTGCTCAGACAACGGAAACATTTTCCATCCATGTGCTTCAGGAAATTTTCTCTTCTGGATTGAGAACACTCTTGGTTGTTGGCTCGATTGAATGAAGGAGACTTTCGCCACCAATGCTTCTTTCTGACTTCTTCCCAGTTGCTTTCGGCGAATTGATGACTAGCAGAGACCAGAGACGAGACCGGAGGATTTTGCGCTGAAGGAGGAGGATTCTAAGAAGACAGGACGAGACGTCGGCCACTCTTGAGAGTCTTGATATCCTTCAGCACTGATACCGACGGGGAAGAAGGTCGTGGTGCAGCTGGCCGATGAGGATCGAGCTCAGACTGAGCAGCGGATATGGGGAGATCCATCAGCACAGAGGAGTAAAGACGCCTTGTACTTGGATGTACCAAACCAGCCAAAGAACGATCAATTGGGGAACGCGGCGCCATGAATGCTGTAGCAGCCGAGCTGGAGGAGGGGTGGCCGCCAGAGACCGTCCCGGGAAGCAAGCTGCAAGTGCTGACGGGAGCCGGATCTTCAACTGGATCTTGCAAATCTTGGGGGGGTTTGGCGTGGAGGAGTAACTGTGGAGGGGATTGATGGGAAGGGCCAGCTGAAGGGAAGCATTCTAGGGTAGGGGAGGCTAGGGAGGGCGGCAGATCTGGAGGAGAAAGGGGCGGGGAGGTGGAGAAGGACGGTGATGAATGGGAGGGGCGATAATGGCGGTGACGAGGGTGGGTGTCCGGGCTGAGGGAGTCTGGCATTTGGGCCAACTAGGGGAGAGGAGGGGCGGCGGTGTGGAGAGGCTAAGGCTGGGGGGGGCCGCCGGAGCCCGGAGAGGCCGCCGGCGGGGGCGAGCGACCTAGGAGGTCGCCAGAGCAAGCTAGGTGAAATAGTTGATATGAATGTGGGAAATGCTAGAATGACTTAAATTGTGAAACGGAGGAAGTAGCTAATTCATGCAATAGTTGCTTACTATAATATTAATATATGGTCCCACCTGTCATACACACACTACGTTTTGGAGTCCGTGCTGTAGCCAGCAACAGATCTGTAGCCCGCTGCTCTTCT

Explanation	CPC Score
noncoding (weak)	-0.972641

Transcript ID	Chromosome	Locus	Ref	Alt

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa11LNT0091500.3	osa-miR5795	Cleavage	4.5	23.447	1	22
Osa11LNT0091500.3	osa-miR5795	Cleavage	5.0	18.868	1	22
Osa11LNT0091500.3	osa-miR395t	Cleavage	4.5	18.193	1	21
Osa11LNT0091500.3	osa-miR395c	Cleavage	4.5	18.193	1	21
Osa11LNT0091500.3	osa-miR395u	Cleavage	4.0	18.193	1	21
Osa11LNT0091500.3	osa-miR408-3p	Cleavage	4.5	19.582	1	21
Osa11LNT0091500.3	osa-miR414	Translation	5.0	9.557	1	21
Osa11LNT0091500.3	osa-miR414	Translation	4.5	17.447	1	21
Osa11LNT0091500.3	osa-miR395o	Cleavage	4.0	18.193	1	21
Osa11LNT0091500.3	osa-miR1440a	Translation	4.5	19.149	1	20
Osa11LNT0091500.3	osa-miR1860-3p	Cleavage	4.5	18.514	1	22
Osa11LNT0091500.3	osa-miR1860-3p	Translation	5.0	12.228	1	22
Osa11LNT0091500.3	osa-miR2055	Translation	4.5	22.671	1	21
Osa11LNT0091500.3	osa-miR5077	Translation	5.0	18.177	1	19
Osa11LNT0091500.3	osa-miR5486	Translation	4.0	21.38	1	21

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa11LNT0091500.3	11	Tid1	Morphological trait	Dwarf	nan	nan
Osa11LNT0091500.3	11	elr11-1	Physiological trait	Eating quality	RM1812	RM209
Osa11LNT0091500.3	11	qDLR11	Resistance or Tolerance	Other soil stress tolerance	RM2596	RM286
Osa11LNT0091500.3	11	fer11	Resistance or Tolerance	Cold tolerance	RM3701	RM552
Osa11LNT0091500.3	11	nan	Morphological trait	Seed	RM332	RM229

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus