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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa01LNT0000200.1

CCACAAATCACCCTTGCTCAGATATGAAAGCACATTGTCTGAGGAAAAAAGATAGCACACCATCACTCCCCATTCGAATCAACACACAAATATCAGAAACCATGTGGCTTCCTTTTTTTTTGAGAGGAAAAGAACTTTCCATTAACTTAAGGACTCAGCAAAATCGCTGGCCACCAAGTCCTCCATGCCCGGAGGCATCATGTCCCATTGTTCAACAGTATTCCGAGGACATTTACAACCCAAAGCTGCTAAAGCATGCGCTACTCTATTACATTCTCGTGGCGCAAAAACAAAGGAACAAGAAAGGAAACTACTTCCGATCAGCTTCTTCAATTCATAAATCAAGCCACCCGTTGCTGCAAGTCTGTGATCATCGGCATCCATAGCTTGCTTCAAGATAATGGAATCAGTTTCAAAAACGACATGGCCCATTCCTAGTGCATTCGCGGCCCTTGCTCCGGCCAAGCACGCAACAACTTCCGCCTGGAAAGCATCCAACAGATAAGATATTCTACCAGCACTTGACAGGATAACCTCTCCCTCCGAATCCCGAATTACAAAACCCCATCCTCCTTCCCCTGTTTCAGCTATATATGCTCCATCAGAATTTATCTTCAGTTTACCCACAGCAGGTCTGCACCTTACAAAATCTGTTGCATTCTTCCCAACAAAACCATGTGGCTTCCTTGTTGCAGAAAATAAACTAACTCACCTTGTGAATCGTTGTGGACTCTTTGTTGCTTGCCACAAGTTGAGAAATCCTGGGATTCATGATGAGAATCGGTTGAGAAGACTTGGTCATCTCAACCACCGACGCAGGGATCGCCACTGTGCGCGAATGGCTCCATGGAAGCCTCGCCGACGATCGCCGGAATCGCCACGAGCACCTCCCCGACTGCCGTGGGGACAACAAAACGTGTCTCGCAGACAAAACACAACGACCCTCCTCCCCCGCGCTCTCTGCCAAGCCCAAGGGTAGCACGAGGGCTCCTCCCGCCGGAGAAGACGACGACAGCATAGCACCCCTGCTGATGCGTCGCCGCCACCTTCTCTCCTTCCCTATATGCTCCTTCTCTCTCCTCACCGATAGGGGAAAGCTCCTTCTCTCTCACTTTCTCCCGTGCGTGGCGGAGAAAGAAAATG

Coding Potentia
Explanation CPC Score
noncoding -1.08877
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa01LNT0000200.1 1 436948 C T
Osa01LNT0000200.1 1 436967 G A
Osa01LNT0000200.1 1 436989 T C
Osa01LNT0000200.1 1 437056 A G
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa01LNT0000200.1 osa-miR528-5p Cleavage 5.0 15.031 1 21
Osa01LNT0000200.1 osa-miR1868 Translation 4.5 16.729 1 24
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa01LNT0000200.1 1 n+p1a Resistance or Tolerance Other soil stress tolerance C161 R753
Osa01LNT0000200.1 1 n+s1a Resistance or Tolerance Other soil stress tolerance C161 R753
Osa01LNT0000200.1 1 Gc Others Others nan nan
Osa01LNT0000200.1 1 yd1a Morphological trait Seed R753 C161
Osa01LNT0000200.1 1 nan Physiological trait Eating quality C161 R753
Osa01LNT0000200.1 1 nan Physiological trait Eating quality C161 R753
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus