>Osa12LNT0124600.3

CCTCATCAATAAACAAGCGACTTAATTCTAGTCTATAGTAATCCAAATACAATCCTTTGTTATATCTAGCGATCTCTACAATCTACATTGTCTATGTATCCAACATAATTCGCACCTCACCATTACTTTTAGGATAAGTGATTTTGCTCTGATCTGCCTCTGTATTCGTGGGAACTTGCTGCTGCTGCTCTTTTATCTCCTTCCCTTTTCCCCAGAGGAAGGAATAGAGGCCAATGATTATCATAAATGCCCCTAGCAAGCTCCCGACAGAGATGTCGCTTCCAAGCAGCATCGAGTCAAGGACGACGGTGATGATCAGCGCAAGCGAGTTGAACATGGAGGGGTAGGTTGGCCCTCGCCGTGACACCGCCCACGTGATCAAGCAGAAGGTGGCAGCCGTGTTGAAAACCCCCGAATAGATGATGGTGATCAGCTGCAGATCCCAGTGGAGTGCCCATGCCGACCGGTCCCGGTCGACGGCGATCCCGATCACCACCGCCTGGATTGTCCCCATCAAGCATGCGAGCATCGTCGAGAAGTACTTAGATGGGAACTCCTTGTTCACTTTGGCCTGAACGATGAACCAGAAGGCGTAGCTGAGGCAACTGCCGCAAAGGAAGAGCGTCCCGATGAGCATGTTGTGGTGGGTAGGGAAGGTGGAGTCGTCGCTGCCGCCGATCGCCCGCAGCTGCGCCGGCTTCAGCAGGTGGGTAGGCCACAAATGCAGCAGCTTGCCCCTGTACAGGCTCACCACCATGGTGCCCACAACACAGATCACCGTGCCAATCACCTTTATCATGCCAGACCGCGTCTTCAGCTTCAGCTTCTCCAATCGGAAGATCGCTGCAATGATGAAGGTAACGACGGGGACCAAATTTAGGAAATTGACGGTGTATCCAGCATTGGTAGCGCGTAGGCCGTAGTAGTGTAGCCCCATAGCCAAAACAATTCCGAACAAAGCGTTGAAAAATATCCAGCCCAGTACCTTGTAGTTAACCTTTTTCATCATTTGCCTCTCGAACCAGAAGGCGAAGGGTAACATGGTGACGGTGCCAATGAGGTTGCGGTATGCGAGGAGGACGAAAGGTGCCATCCCACTATTGAATGATAGCTTCGCGAGGAGGAGGGCACCTATGGTGAATAGCTGGACCAGTACCATGCTCAATGGGAGCAGTAACCGCTCCGCCATCCCTGGCTTCGTCTTCGTGGTCATCGTCTCTGCCATCATGTTGGTACCCTTAGAGCATTCCATTGTAGCCACCCCTTCTGATCACTCTCGCATGGTCTGCAACAACGTCAGCATCAGTTGGGAATAAAACTAATTGAGCGATTTGCAACAAGGTCATCAGCATCAGTGGGGAAAACCAATTGAGCAATTTTTCAGGATTAAGAACTGTAATCACTCGGGCCATATCCACACCAAAGATGATGAGGAGATGTCCACAGCGACAACTTCAGTTGAGCTTAAATCTACATGCCACCAATTCCTCAAATACTACTACTTCTAAGCCAGGGGCCTGAATTCAACTCCCTATGGAAATGGTGATGGCAAAGTGAGAACCAAGTTTGATATGATCAAAACAGAAAGAGGGCGATGGTAGGGATTGATAGATGATGGAAGCAAATATGAGTAGAGAATATAGCTCGCACTAGCCGCGCCGAATTGATGGAGAGTAGTTTGGCTAAGAGAGATTGAGGTTGGAGAAGAGAGGGGGTAATTGAAGCCTGGAGTGCAGAGTGTCGAGGAAAGGGATGC

Explanation	CPC Score
noncoding (weak)	-0.852964

Transcript ID	Chromosome	Locus	Ref	Alt
Osa12LNT0124600.3	12	10999410	A	G
Osa12LNT0124600.3	12	10999506	C	T
Osa12LNT0124600.3	12	10999509	C	T
Osa12LNT0124600.3	12	10999518	T	A
Osa12LNT0124600.3	12	10999761	G	A
Osa12LNT0124600.3	12	11000086	T	C
Osa12LNT0124600.3	12	11000880	C	T
Osa12LNT0124600.3	12	11002057	T	C
Osa12LNT0124600.3	12	11002222	T	C
Osa12LNT0124600.3	12	11002458	G	C
Osa12LNT0124600.3	12	11002941	A	C
Osa12LNT0124600.3	12	11003962	C	T
Osa12LNT0124600.3	12	11003771	G	A

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa12LNT0124600.3	osa-miR5536	Cleavage	4.5	15.527	1	22
Osa12LNT0124600.3	osa-miR5832	Cleavage	2.0	21.622	1	21
Osa12LNT0124600.3	osa-miR1440b	Cleavage	3.5	14.04	1	21
Osa12LNT0124600.3	osa-miR168b	Cleavage	5.0	20.402	1	21
Osa12LNT0124600.3	osa-miR529a	Cleavage	5.0	12.27	1	20
Osa12LNT0124600.3	osa-miR1424	Cleavage	5.0	20.843	1	21
Osa12LNT0124600.3	osa-miR444d.3	Translation	4.5	16.58	1	21
Osa12LNT0124600.3	osa-miR1850.3	Translation	4.5	16.079	1	22
Osa12LNT0124600.3	osa-miR1871	Translation	5.0	24.738	1	24
Osa12LNT0124600.3	osa-miR2919	Cleavage	3.5	22.556	1	19
Osa12LNT0124600.3	osa-miR3979-3p	Cleavage	4.0	21.926	1	20

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa12LNT0124600.3	12	qtl12.1	Resistance or Tolerance	Drought tolerance	RM7195	RM28166
Osa12LNT0124600.3	12	qtl12.1	Resistance or Tolerance	Drought tolerance	RM7195	RM28166
Osa12LNT0124600.3	12	qtl12.1	Resistance or Tolerance	Drought tolerance	RM7195	RM28166
Osa12LNT0124600.3	12	qDLA-12-3	Resistance or Tolerance	Blast resistance	RG463	RZ816
Osa12LNT0124600.3	12	nan	Resistance or Tolerance	Other soil stress tolerance	RG9	RG241
Osa12LNT0124600.3	12	nan	Resistance or Tolerance	Other soil stress tolerance	RG9	RG241
Osa12LNT0124600.3	12	nan	Resistance or Tolerance	Other soil stress tolerance	RG9	RG241
Osa12LNT0124600.3	12	nan	Morphological trait	Seed	RG543	RG81
Osa12LNT0124600.3	12	nan	Physiological trait	Eating quality	RM247	RM179

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus