>Osa12LNT0129900.1

AAATCAACCTCCCATTTACTTCCCTTTCCCCTAAAACTCTTGCTCCACCAAAGGAAATTGAGATCGCGTCGCCGTCGGGTGTCGAACACCTGGTGAGCGAGGGGTTGCACCGCTGCCGCAGGGCCTCTCGCCCGGTGTGGGTGGCGGGATGTGGAGAGGAGGTGCTCGTGTTGCCATTGCTGCTGTTGGAGGGAGTCGGGAGCTGCTGAACAAGGAAAACCGGGCGTCGAACATCTGCGACCATCGCCGACCGCCGGCTGCCCCTTTTTCGACCACACCGCACCACGCGCCATCAAACTTCGCCGTTCCGCCACTCCGTGATATCCGAGGGAATTGTTGAGTCGATTGAGGAGCAGGGACAGCAAGACTGTGATCCAGGAAGTGGATGGCAATGAAGTCGAGGAGGATCCCTATGCTTATCTTTAGGAGGATGCAGAGGATGACGGCGCTCTGTAGGTCTTAGTTACGGTCGTTGCCTGTGGCAATGACATGGCCGCTGCCTTATCTATTTCTGCTTTGGCATGTATTCCGGACCGTTCGGTCCTATGTTCTAGTCAATGCCTGCGGGCCTATGATGTAATAATTTATGCTAGACAATCTTTGTATGTGTACTTGGTATTTCAGCAATGTAACATGAGTGATTCCTGTT

Explanation	CPC Score
noncoding	-1.09705

Transcript ID	Chromosome	Locus	Ref	Alt

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa12LNT0129900.1	osa-miR2275a	Cleavage	4.5	17.308	1	22
Osa12LNT0129900.1	osa-miR2275b	Cleavage	4.5	17.308	1	22
Osa12LNT0129900.1	osa-miR2864.1	Translation	4.5	23.304	1	21

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa12LNT0129900.1	12	qDLA-12-3	Resistance or Tolerance	Blast resistance	RG463	RZ816
Osa12LNT0129900.1	12	nan	Resistance or Tolerance	Other soil stress tolerance	RG9	RG457
Osa12LNT0129900.1	12	nan	Resistance or Tolerance	Other soil stress tolerance	RG9	RG457
Osa12LNT0129900.1	12	nan	Morphological trait	Seed	RG543	RG81
Osa12LNT0129900.1	12	nan	Resistance or Tolerance	Other soil stress tolerance	RG9	RG457

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus