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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs

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Transcript id Chrom Gene Location Classification Length GC Content(%) Exon Number
Osa07LNT0390800.1 7 Osa07LNG0390800 26886336-26908536 long non-coding(lnc) isoforms of known genes 12113 44.4316 36
Osa03LNT0234400.1 3 Osa03LNG0234400 30564703-30582453 long non-coding(lnc) isoforms of known genes 11661 44.19004 19
Osa09LNT0428600.1 9 Osa09LNG0428600 3586694-3601263 sense lncRNA 10896 42.52019 11
Osa06LNT0358100.1 6 Osa06LNG0358100 28208657-28234184 long non-coding(lnc) isoforms of known genes 10449 40.24309 39
Osa02LNT0140500.1 2 Osa02LNG0140500 573103-590234 long non-coding(lnc) isoforms of known genes 8919 43.099 19
Osa03LNT0240000.1 3 Osa03LNG0240000 33530086-33544590 long non-coding(lnc) isoforms of known genes 8893 42.5953 13
Osa12LNT0122900.2 12 Osa12LNG0122900 9303179-9318103 long non-coding(lnc) isoforms of known genes 8700 41.36782 16
Osa04LNT0275500.1 4 Osa04LNG0275500 27795857-27815440 long non-coding(lnc) isoforms of known genes 8683 44.85777 31
Osa10LNT0081100.1 10 Osa10LNG0081100 22861455-22876432 long non-coding(lnc) isoforms of known genes 8569 47.95192 22
Osa02LNT0140500.2 2 Osa02LNG0140500 573103-590234 long non-coding(lnc) isoforms of known genes 8490 43.47468 20
Osa12LNT0122900.1 12 Osa12LNG0122900 9303179-9318103 long non-coding(lnc) isoforms of known genes 8284 41.33269 17
Osa02LNT0156100.1 2 Osa02LNG0156100 9917022-9928340 long non-coding(lnc) isoforms of known genes 8270 46.89238 5
Osa05LNT0301600.1 5 Osa05LNG0301600 13064221-13078062 long non-coding(lnc) isoforms of known genes 7648 44.41684 34
Osa01LNT0058300.1 1 Osa01LNG0058300 43120167-43134502 long non-coding(lnc) isoforms of known genes 7637 45.93427 25
Osa05LNT0301600.2 5 Osa05LNG0301600 13064221-13078062 long non-coding(lnc) isoforms of known genes 7632 44.41824 34
Osa01LNT0029300.2 1 Osa01LNG0029300 26060892-26071730 long non-coding(lnc) isoforms of known genes 7610 47.3456 17
Osa01LNT0046100.1 1 Osa01LNG0046100 36325404-36336607 long non-coding(lnc) isoforms of known genes 7593 44.64638 22
Osa05LNT0295600.1 5 Osa05LNG0295600 3704302-3714723 long non-coding(lnc) isoforms of known genes 7585 45.76137 13
Osa02LNT0179500.1 2 Osa02LNG0179500 28293795-28308016 long non-coding(lnc) isoforms of known genes 7363 43.73217 21
Osa01LNT0029300.1 1 Osa01LNG0029300 26060892-26071730 long non-coding(lnc) isoforms of known genes 7339 47.75855 17
Osa02LNT0179500.2 2 Osa02LNG0179500 28293795-28308016 long non-coding(lnc) isoforms of known genes 7266 43.84806 22
Osa02LNT0140600.1 2 Osa02LNG0140600 748721-759539 long non-coding(lnc) isoforms of known genes 7261 47.34885 14
Osa07LNT0380900.1 7 Osa07LNG0380900 18625486-18639047 long non-coding(lnc) isoforms of known genes 7194 43.63358 11
Osa07LNT0393900.3 7 Osa07LNG0393900 28832616-28844860 long non-coding(lnc) isoforms of known genes 7129 42.46037 17
Osa06LNT0354700.1 6 Osa06LNG0354700 26471877-26478872 sense lncRNA 6917 40.24866 2
Osa10LNT0059900.1 10 Osa10LNG0059900 1189829-1203171 long non-coding(lnc) isoforms of known genes 6895 47.84627 15
Osa03LNT0240000.2 3 Osa03LNG0240000 33530086-33544590 long non-coding(lnc) isoforms of known genes 6878 40.02617 8
Osa10LNT0071800.1 10 Osa10LNG0071800 14904210-14912952 long non-coding(lnc) isoforms of known genes 6867 43.1047 6
Osa07LNT0392200.1 7 Osa07LNG0392200 27902457-27912642 sense lncRNA 6859 45.82301 10
Osa03LNT0224700.1 3 Osa03LNG0224700 23623526-23630664 long non-coding(lnc) isoforms of known genes 6833 39.99707 4
Osa02LNT0162900.1 2 Osa02LNG0162900 15931330-15943020 long non-coding(lnc) isoforms of known genes 6828 41.95958 27
Osa11LNT0099700.1 11 Osa11LNG0099700 17127130-17134252 long non-coding(lnc) isoforms of known genes 6803 43.9512 3
Osa10LNT0071800.2 10 Osa10LNG0071800 14904210-14912952 long non-coding(lnc) isoforms of known genes 6790 43.13697 6
Osa01LNT0055500.1 1 Osa01LNG0055500 41155827-41165147 long non-coding(lnc) isoforms of known genes 6770 46.54357 9
Osa09LNT0430500.1 9 Osa09LNG0430500 6037941-6049270 long non-coding(lnc) isoforms of known genes 6717 45.54116 7
Osa02LNT0175200.1 2 Osa02LNG0175200 25379691-25392806 long non-coding(lnc) isoforms of known genes 6671 42.94708 17
Osa08LNT0409700.2 8 Osa08LNG0409700 14320904-14328132 long non-coding(lnc) isoforms of known genes 6643 41.38191 3
Osa06LNT0332400.2 6 Osa06LNG0332400 5024373-5034803 long non-coding(lnc) isoforms of known genes 6597 39.60891 7
Osa02LNT0183400.1 2 Osa02LNG0183400 30542197-30553539 long non-coding(lnc) isoforms of known genes 6582 42.17563 18
Osa11LNT0086500.1 11 Osa11LNG0086500 2247726-2256211 long non-coding(lnc) isoforms of known genes 6574 47.14025 10
Osa04LNT0289400.1 4 Osa04LNG0289400 35346591-35355861 long non-coding(lnc) isoforms of known genes 6524 47.07235 14
Osa05LNT0321000.1 5 Osa05LNG0321000 27975701-27987045 long non-coding(lnc) isoforms of known genes 6470 47.6507 18
Osa05LNT0312500.1 5 Osa05LNG0312500 21942980-21959335 long non-coding(lnc) isoforms of known genes 6458 44.73521 23
Osa11LNT0101100.2 11 Osa11LNG0101100 18552567-18570136 long non-coding(lnc) isoforms of known genes 6410 42.35569 33
Osa01LNT0016700.3 1 Osa01LNG0016700 13246387-13262169 long non-coding(lnc) isoforms of known genes 6408 39.34145 25
Osa05LNT0322900.1 5 Osa05LNG0322900 29293506-29304267 long non-coding(lnc) isoforms of known genes 6386 40.46351 16
Osa07LNT0389200.1 7 Osa07LNG0389200 25679840-25688015 long non-coding(lnc) isoforms of known genes 6376 41.68758 5
Osa08LNT0400200.1 8 Osa08LNG0400200 4523794-4538688 long non-coding(lnc) isoforms of known genes 6369 45.70576 22
Osa06LNT0329900.1 6 Osa06LNG0329900 3363911-3371061 long non-coding(lnc) isoforms of known genes 6356 44.163 9
Osa10LNT0067100.1 10 Osa10LNG0067100 11305125-11317869 long non-coding(lnc) isoforms of known genes 6354 42.4457 11