\
RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs

filter

Transcript id Chrom Gene Location Classification Length GC Content(%) Exon Number
Osa01LNT0014200.1 1 Osa01LNG0014200 10119527-10120347 intronic lncRNA 821 43.72716 1
Osa01LNT0014300.1 1 Osa01LNG0014300 10346364-10349986 long non-coding(lnc) isoforms of known genes 2814 43.4968 3
Osa01LNT0014400.1 1 Osa01LNG0014400 10515066-10515961 Antisense lncRNA 494 48.98785 4
Osa01LNT0014500.1 1 Osa01LNG0014500 10515442-10516652 long non-coding(lnc) isoforms of known genes 1028 45.62257 3
Osa01LNT0014600.1 1 Osa01LNG0014600 10518410-10522215 Antisense lncRNA 2497 55.02603 7
Osa01LNT0014600.2 1 Osa01LNG0014600 10518410-10522215 Antisense lncRNA 1965 57.09924 7
Osa01LNT0014700.1 1 Osa01LNG0014700 10805527-10808064 long non-coding(lnc) isoforms of known genes 1713 51.25511 3
Osa01LNT0014800.1 1 Osa01LNG0014800 10814139-10818530 long non-coding(lnc) isoforms of known genes 1242 47.98712 11
Osa01LNT0014900.1 1 Osa01LNG0014900 10943217-10944050 intronic lncRNA 834 46.28297 1
Osa01LNT0015000.1 1 Osa01LNG0015000 10944727-10945059 intronic lncRNA 333 63.36336 1
Osa01LNT0015100.1 1 Osa01LNG0015100 10980741-10983339 long non-coding(lnc) isoforms of known genes 2274 43.44767 4
Osa01LNT0015100.2 1 Osa01LNG0015100 10980741-10983339 long non-coding(lnc) isoforms of known genes 1462 47.94802 4
Osa01LNT0015200.1 1 Osa01LNG0015200 11025448-11038937 long non-coding(lnc) isoforms of known genes 4075 42.99387 27
Osa01LNT0015300.1 1 Osa01LNG0015300 11089065-11093985 long non-coding(lnc) isoforms of known genes 2107 46.65401 3
Osa01LNT0015400.1 1 Osa01LNG0015400 11253654-11266441 long non-coding(lnc) isoforms of known genes 3726 47.2088 13
Osa01LNT0015400.3 1 Osa01LNG0015400 11253654-11266441 long non-coding(lnc) isoforms of known genes 3771 46.8576 11
Osa01LNT0015400.2 1 Osa01LNG0015400 11253654-11266441 long non-coding(lnc) isoforms of known genes 3687 47.21996 13
Osa01LNT0001200.1 1 Osa01LNG0001200 1145920-1155175 long non-coding(lnc) isoforms of known genes 3140 46.52866 20
Osa01LNT0001200.2 1 Osa01LNG0001200 1145920-1155175 long non-coding(lnc) isoforms of known genes 3115 46.54896 20
Osa01LNT0001000.1 1 Osa01LNG0001000 1160198-1164619 long non-coding(lnc) isoforms of known genes 992 56.65323 4
Osa01LNT0015600.1 1 Osa01LNG0015600 11625293-11637356 long non-coding(lnc) isoforms of known genes 3940 44.8731 20
Osa01LNT0015600.2 1 Osa01LNG0015600 11625293-11637356 long non-coding(lnc) isoforms of known genes 3945 44.84157 20
Osa01LNT0455200.1 1 Osa01LNG0455200 11640550-11640811 intergenetic lncRNA (lincRNA) 262 27.48092 1
Osa01LNT0015500.1 1 Osa01LNG0015500 11670153-11670504 intergenetic lncRNA (lincRNA) 352 60.79545 1
Osa01LNT0001100.1 1 Osa01LNG0001100 1168737-1171126 long non-coding(lnc) isoforms of known genes 1240 48.95161 3
Osa01LNT0001100.2 1 Osa01LNG0001100 1168737-1171126 long non-coding(lnc) isoforms of known genes 1274 49.05808 3
Osa01LNT0455300.1 1 Osa01LNG0455300 11725873-11726117 intergenetic lncRNA (lincRNA) 245 23.26531 1
Osa01LNT0455400.1 1 Osa01LNG0455400 11726193-11726419 intergenetic lncRNA (lincRNA) 227 25.55066 1
Osa01LNT0001300.2 1 Osa01LNG0001300 1186745-1190543 long non-coding(lnc) isoforms of known genes 1722 46.98026 8
Osa01LNT0001300.1 1 Osa01LNG0001300 1186745-1190543 long non-coding(lnc) isoforms of known genes 1705 46.97947 8
Osa01LNT0455500.1 1 Osa01LNG0455500 11986496-11986725 intergenetic lncRNA (lincRNA) 230 25.65217 1
Osa01LNT0455600.1 1 Osa01LNG0455600 11986496-11986725 intergenetic lncRNA (lincRNA) 230 25.65217 1
Osa01LNT0455700.1 1 Osa01LNG0455700 11987091-11987317 intergenetic lncRNA (lincRNA) 227 37.00441 1
Osa01LNT0015700.1 1 Osa01LNG0015700 12150351-12151264 intergenetic lncRNA (lincRNA) 630 46.50794 3
Osa01LNT0455800.1 1 Osa01LNG0455800 12160598-12160827 intronic lncRNA 230 23.47826 1
Osa01LNT0456000.1 1 Osa01LNG0456000 12182033-12182307 intergenetic lncRNA (lincRNA) 275 25.45455 1
Osa01LNT0455900.1 1 Osa01LNG0455900 12182033-12182307 intergenetic lncRNA (lincRNA) 275 25.45455 1
Osa01LNT0015900.1 1 Osa01LNG0015900 12235366-12248204 long non-coding(lnc) isoforms of known genes 3383 46.70411 19
Osa01LNT0015900.2 1 Osa01LNG0015900 12235366-12248204 long non-coding(lnc) isoforms of known genes 3367 46.71815 19
Osa01LNT0015800.1 1 Osa01LNG0015800 12258257-12263046 long non-coding(lnc) isoforms of known genes 2985 52.49581 5
Osa01LNT0016000.1 1 Osa01LNG0016000 12289715-12291421 intergenetic lncRNA (lincRNA) 1504 57.44681 2
Osa01LNT0016100.1 1 Osa01LNG0016100 12326147-12326463 intergenetic lncRNA (lincRNA) 317 48.26498 1
Osa01LNT0016300.1 1 Osa01LNG0016300 12584827-12594751 long non-coding(lnc) isoforms of known genes 5286 42.67877 18
Osa01LNT0016200.1 1 Osa01LNG0016200 12595320-12597743 intergenetic lncRNA (lincRNA) 1953 50.28162 3
Osa01LNT0001400.1 1 Osa01LNG0001400 1267929-1268285 intergenetic lncRNA (lincRNA) 357 50.14006 1
Osa01LNT0016500.1 1 Osa01LNG0016500 12921581-12924616 sense lncRNA 826 53.99516 2
Osa01LNT0456100.1 1 Osa01LNG0456100 12938433-12938675 intergenetic lncRNA (lincRNA) 243 23.45679 1
Osa01LNT0456200.1 1 Osa01LNG0456200 12938433-12938675 intergenetic lncRNA (lincRNA) 243 23.45679 1
Osa01LNT0454100.1 1 Osa01LNG0454100 1298865-1299126 intergenetic lncRNA (lincRNA) 262 41.22137 1
Osa01LNT0454200.1 1 Osa01LNG0454200 1299679-1299923 intergenetic lncRNA (lincRNA) 245 25.30612 1
Osa01LNT0454300.1 1 Osa01LNG0454300 1299679-1299923 intergenetic lncRNA (lincRNA) 245 25.30612 1
Osa01LNT0016400.1 1 Osa01LNG0016400 13174586-13174971 intergenetic lncRNA (lincRNA) 386 59.84456 1
Osa01LNT0016700.1 1 Osa01LNG0016700 13246387-13262169 long non-coding(lnc) isoforms of known genes 3384 41.60757 26
Osa01LNT0016700.3 1 Osa01LNG0016700 13246387-13262169 long non-coding(lnc) isoforms of known genes 6408 39.34145 25
Osa01LNT0016700.2 1 Osa01LNG0016700 13246387-13262169 long non-coding(lnc) isoforms of known genes 3419 42.17607 25
Osa01LNT0016600.1 1 Osa01LNG0016600 13294354-13294933 sense lncRNA 419 39.14081 2
Osa01LNT0016800.1 1 Osa01LNG0016800 13319342-13323798 long non-coding(lnc) isoforms of known genes 1341 50.63386 6
Osa01LNT0016900.1 1 Osa01LNG0016900 13389163-13392419 intergenetic lncRNA (lincRNA) 770 33.76623 2
Osa01LNT0017000.1 1 Osa01LNG0017000 13527300-13527580 intronic lncRNA 281 30.96085 1
Osa01LNT0017200.1 1 Osa01LNG0017200 13582078-13584915 long non-coding(lnc) isoforms of known genes 1188 50.50505 8
Osa01LNT0456300.1 1 Osa01LNG0456300 13697749-13697961 intergenetic lncRNA (lincRNA) 213 49.76526 1
Osa01LNT0017100.1 1 Osa01LNG0017100 13713086-13715124 intergenetic lncRNA (lincRNA) 1812 46.79912 2
Osa01LNT0017300.1 1 Osa01LNG0017300 13799955-13804722 long non-coding(lnc) isoforms of known genes 2649 49.03737 7
Osa01LNT0456500.1 1 Osa01LNG0456500 13919146-13919420 intergenetic lncRNA (lincRNA) 275 25.81818 1
Osa01LNT0456400.1 1 Osa01LNG0456400 13919146-13919420 intergenetic lncRNA (lincRNA) 275 25.81818 1
Osa01LNT0456600.1 1 Osa01LNG0456600 14259115-14259317 intergenetic lncRNA (lincRNA) 203 33.00493 1
Osa01LNT0017400.1 1 Osa01LNG0017400 14392028-14398576 long non-coding(lnc) isoforms of known genes 1745 45.27221 7
Osa01LNT0017400.3 1 Osa01LNG0017400 14392028-14398576 long non-coding(lnc) isoforms of known genes 2585 43.17215 6
Osa01LNT0017400.2 1 Osa01LNG0017400 14392028-14398576 long non-coding(lnc) isoforms of known genes 1630 44.47853 7
Osa01LNT0017500.1 1 Osa01LNG0017500 14457388-14458070 intergenetic lncRNA (lincRNA) 683 42.45974 1
Osa01LNT0017600.1 1 Osa01LNG0017600 14551012-14551278 intergenetic lncRNA (lincRNA) 267 38.20225 1
Osa01LNT0017700.1 1 Osa01LNG0017700 14553516-14554163 intergenetic lncRNA (lincRNA) 648 28.39506 1
Osa01LNT0017800.1 1 Osa01LNG0017800 14576601-14581963 sense lncRNA 4923 42.53504 2
Osa01LNT0017900.1 1 Osa01LNG0017900 14597822-14604783 sense lncRNA 4824 41.85323 5
Osa01LNT0018200.1 1 Osa01LNG0018200 14622914-14623796 long non-coding(lnc) isoforms of known genes 703 44.95021 2
Osa01LNT0018000.1 1 Osa01LNG0018000 14679350-14683391 long non-coding(lnc) isoforms of known genes 1355 43.32103 3
Osa01LNT0018100.1 1 Osa01LNG0018100 14702436-14705998 long non-coding(lnc) isoforms of known genes 1553 56.66452 5
Osa01LNT0018300.1 1 Osa01LNG0018300 14731816-14738424 long non-coding(lnc) isoforms of known genes 2880 45.0 12
Osa01LNT0018400.1 1 Osa01LNG0018400 14742684-14745036 sense lncRNA 835 51.01796 4
Osa01LNT0018500.1 1 Osa01LNG0018500 14744468-14744702 intergenetic lncRNA (lincRNA) 235 33.61702 1
Osa01LNT0018600.2 1 Osa01LNG0018600 14745275-14747937 Antisense lncRNA 993 47.33132 10
Osa01LNT0018600.1 1 Osa01LNG0018600 14745275-14747937 Antisense lncRNA 976 47.64344 10
Osa01LNT0018900.1 1 Osa01LNG0018900 14754865-14764487 long non-coding(lnc) isoforms of known genes 2901 46.88039 12
Osa01LNT0018700.1 1 Osa01LNG0018700 14775727-14777993 intergenetic lncRNA (lincRNA) 932 49.67811 3
Osa01LNT0018800.1 1 Osa01LNG0018800 14783393-14785500 long non-coding(lnc) isoforms of known genes 1216 42.43421 3
Osa01LNT0019000.1 1 Osa01LNG0019000 14798988-14801247 long non-coding(lnc) isoforms of known genes 893 54.75924 3
Osa01LNT0019100.1 1 Osa01LNG0019100 14955728-14959343 sense lncRNA 2246 39.09172 3
Osa01LNT0019100.2 1 Osa01LNG0019100 14955728-14959343 sense lncRNA 1986 39.47633 4
Osa01LNT0019200.1 1 Osa01LNG0019200 15019933-15023923 long non-coding(lnc) isoforms of known genes 1117 50.76097 9
Osa01LNT0019300.1 1 Osa01LNG0019300 15414881-15421118 sense lncRNA 4242 46.95898 6
Osa01LNT0456700.1 1 Osa01LNG0456700 15579586-15579860 intergenetic lncRNA (lincRNA) 275 25.09091 1
Osa01LNT0019400.1 1 Osa01LNG0019400 15672663-15675607 sense lncRNA 920 62.28261 3
Osa01LNT0001600.1 1 Osa01LNG0001600 1569644-1576596 long non-coding(lnc) isoforms of known genes 3663 55.74666 15
Osa01LNT0001600.2 1 Osa01LNG0001600 1569644-1576596 long non-coding(lnc) isoforms of known genes 2642 51.02195 9
Osa01LNT0456800.1 1 Osa01LNG0456800 15797272-15797480 intergenetic lncRNA (lincRNA) 209 32.53589 1
Osa01LNT0457000.1 1 Osa01LNG0457000 16124687-16124959 intergenetic lncRNA (lincRNA) 273 23.44322 1
Osa01LNT0456900.1 1 Osa01LNG0456900 16124687-16124959 intergenetic lncRNA (lincRNA) 273 23.44322 1
Osa01LNT0457100.1 1 Osa01LNG0457100 16132800-16133066 intergenetic lncRNA (lincRNA) 267 25.46816 1
Osa01LNT0019500.2 1 Osa01LNG0019500 16202445-16205296 intergenetic lncRNA (lincRNA) 1328 44.95482 3
Osa01LNT0019500.1 1 Osa01LNG0019500 16202445-16205296 intergenetic lncRNA (lincRNA) 1370 44.45255 3