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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs

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Transcript id Chrom Gene Location Classification Length GC Content(%) Exon Number
Osa01LNT0014200.1 1 Osa01LNG0014200 10119527-10120347 intronic lncRNA 821 43.72716 1
Osa01LNT0014300.1 1 Osa01LNG0014300 10346364-10349986 long non-coding(lnc) isoforms of known genes 2814 43.4968 3
Osa01LNT0014400.1 1 Osa01LNG0014400 10515066-10515961 Antisense lncRNA 494 48.98785 4
Osa01LNT0014500.1 1 Osa01LNG0014500 10515442-10516652 long non-coding(lnc) isoforms of known genes 1028 45.62257 3
Osa01LNT0014600.2 1 Osa01LNG0014600 10518410-10522215 Antisense lncRNA 1965 57.09924 7
Osa01LNT0014600.1 1 Osa01LNG0014600 10518410-10522215 Antisense lncRNA 2497 55.02603 7
Osa01LNT0014700.1 1 Osa01LNG0014700 10805527-10808064 long non-coding(lnc) isoforms of known genes 1713 51.25511 3
Osa01LNT0014800.1 1 Osa01LNG0014800 10814139-10818530 long non-coding(lnc) isoforms of known genes 1242 47.98712 11
Osa01LNT0014900.1 1 Osa01LNG0014900 10943217-10944050 intronic lncRNA 834 46.28297 1
Osa01LNT0015000.1 1 Osa01LNG0015000 10944727-10945059 intronic lncRNA 333 63.36336 1
Osa01LNT0015100.1 1 Osa01LNG0015100 10980741-10983339 long non-coding(lnc) isoforms of known genes 2274 43.44767 4
Osa01LNT0015100.2 1 Osa01LNG0015100 10980741-10983339 long non-coding(lnc) isoforms of known genes 1462 47.94802 4
Osa01LNT0015200.1 1 Osa01LNG0015200 11025448-11038937 long non-coding(lnc) isoforms of known genes 4075 42.99387 27
Osa01LNT0015300.1 1 Osa01LNG0015300 11089065-11093985 long non-coding(lnc) isoforms of known genes 2107 46.65401 3
Osa01LNT0015400.1 1 Osa01LNG0015400 11253654-11266441 long non-coding(lnc) isoforms of known genes 3726 47.2088 13
Osa01LNT0015400.3 1 Osa01LNG0015400 11253654-11266441 long non-coding(lnc) isoforms of known genes 3771 46.8576 11
Osa01LNT0015400.2 1 Osa01LNG0015400 11253654-11266441 long non-coding(lnc) isoforms of known genes 3687 47.21996 13
Osa01LNT0001200.2 1 Osa01LNG0001200 1145920-1155175 long non-coding(lnc) isoforms of known genes 3115 46.54896 20
Osa01LNT0001200.1 1 Osa01LNG0001200 1145920-1155175 long non-coding(lnc) isoforms of known genes 3140 46.52866 20
Osa01LNT0001000.1 1 Osa01LNG0001000 1160198-1164619 long non-coding(lnc) isoforms of known genes 992 56.65323 4
Osa01LNT0015600.2 1 Osa01LNG0015600 11625293-11637356 long non-coding(lnc) isoforms of known genes 3945 44.84157 20
Osa01LNT0015600.1 1 Osa01LNG0015600 11625293-11637356 long non-coding(lnc) isoforms of known genes 3940 44.8731 20
Osa01LNT0455200.1 1 Osa01LNG0455200 11640550-11640811 intergenetic lncRNA (lincRNA) 262 27.48092 1
Osa01LNT0015500.1 1 Osa01LNG0015500 11670153-11670504 intergenetic lncRNA (lincRNA) 352 60.79545 1
Osa01LNT0001100.2 1 Osa01LNG0001100 1168737-1171126 long non-coding(lnc) isoforms of known genes 1274 49.05808 3
Osa01LNT0001100.1 1 Osa01LNG0001100 1168737-1171126 long non-coding(lnc) isoforms of known genes 1240 48.95161 3
Osa01LNT0455300.1 1 Osa01LNG0455300 11725873-11726117 intergenetic lncRNA (lincRNA) 245 23.26531 1
Osa01LNT0455400.1 1 Osa01LNG0455400 11726193-11726419 intergenetic lncRNA (lincRNA) 227 25.55066 1
Osa01LNT0001300.2 1 Osa01LNG0001300 1186745-1190543 long non-coding(lnc) isoforms of known genes 1722 46.98026 8
Osa01LNT0001300.1 1 Osa01LNG0001300 1186745-1190543 long non-coding(lnc) isoforms of known genes 1705 46.97947 8
Osa01LNT0455600.1 1 Osa01LNG0455600 11986496-11986725 intergenetic lncRNA (lincRNA) 230 25.65217 1
Osa01LNT0455500.1 1 Osa01LNG0455500 11986496-11986725 intergenetic lncRNA (lincRNA) 230 25.65217 1
Osa01LNT0455700.1 1 Osa01LNG0455700 11987091-11987317 intergenetic lncRNA (lincRNA) 227 37.00441 1
Osa01LNT0015700.1 1 Osa01LNG0015700 12150351-12151264 intergenetic lncRNA (lincRNA) 630 46.50794 3
Osa01LNT0455800.1 1 Osa01LNG0455800 12160598-12160827 intronic lncRNA 230 23.47826 1
Osa01LNT0456000.1 1 Osa01LNG0456000 12182033-12182307 intergenetic lncRNA (lincRNA) 275 25.45455 1
Osa01LNT0455900.1 1 Osa01LNG0455900 12182033-12182307 intergenetic lncRNA (lincRNA) 275 25.45455 1
Osa01LNT0015900.1 1 Osa01LNG0015900 12235366-12248204 long non-coding(lnc) isoforms of known genes 3383 46.70411 19
Osa01LNT0015900.2 1 Osa01LNG0015900 12235366-12248204 long non-coding(lnc) isoforms of known genes 3367 46.71815 19
Osa01LNT0015800.1 1 Osa01LNG0015800 12258257-12263046 long non-coding(lnc) isoforms of known genes 2985 52.49581 5
Osa01LNT0016000.1 1 Osa01LNG0016000 12289715-12291421 intergenetic lncRNA (lincRNA) 1504 57.44681 2
Osa01LNT0016100.1 1 Osa01LNG0016100 12326147-12326463 intergenetic lncRNA (lincRNA) 317 48.26498 1
Osa01LNT0016300.1 1 Osa01LNG0016300 12584827-12594751 long non-coding(lnc) isoforms of known genes 5286 42.67877 18
Osa01LNT0016200.1 1 Osa01LNG0016200 12595320-12597743 intergenetic lncRNA (lincRNA) 1953 50.28162 3
Osa01LNT0001400.1 1 Osa01LNG0001400 1267929-1268285 intergenetic lncRNA (lincRNA) 357 50.14006 1
Osa01LNT0016500.1 1 Osa01LNG0016500 12921581-12924616 sense lncRNA 826 53.99516 2
Osa01LNT0456200.1 1 Osa01LNG0456200 12938433-12938675 intergenetic lncRNA (lincRNA) 243 23.45679 1
Osa01LNT0456100.1 1 Osa01LNG0456100 12938433-12938675 intergenetic lncRNA (lincRNA) 243 23.45679 1
Osa01LNT0454100.1 1 Osa01LNG0454100 1298865-1299126 intergenetic lncRNA (lincRNA) 262 41.22137 1
Osa01LNT0454300.1 1 Osa01LNG0454300 1299679-1299923 intergenetic lncRNA (lincRNA) 245 25.30612 1