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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs

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Transcript id Chrom Gene Location Classification Length GC Content(%) Exon Number
Osa10LNT0070900.1 10 Osa10LNG0070900 14441451-14443188 intergenetic lncRNA (lincRNA) 967 41.05481 3
Osa10LNT0071000.2 10 Osa10LNG0071000 14474829-14478809 long non-coding(lnc) isoforms of known genes 1480 48.04054 10
Osa10LNT0071000.1 10 Osa10LNG0071000 14474829-14478809 long non-coding(lnc) isoforms of known genes 1497 47.96259 10
Osa10LNT0071100.1 10 Osa10LNG0071100 14513272-14520385 long non-coding(lnc) isoforms of known genes 3706 41.7701 2
Osa10LNT0060100.1 10 Osa10LNG0060100 1458094-1458762 intergenetic lncRNA (lincRNA) 669 42.15247 1
Osa10LNT0071200.1 10 Osa10LNG0071200 14662495-14663728 intergenetic lncRNA (lincRNA) 1234 57.13128 1
Osa10LNT0071300.1 10 Osa10LNG0071300 14741355-14741556 intronic lncRNA 202 36.63366 1
Osa10LNT0071400.3 10 Osa10LNG0071400 14746108-14750175 long non-coding(lnc) isoforms of known genes 1995 50.87719 4
Osa10LNT0071400.2 10 Osa10LNG0071400 14746108-14750175 long non-coding(lnc) isoforms of known genes 2088 50.09579 5
Osa10LNT0071400.1 10 Osa10LNG0071400 14746108-14750175 long non-coding(lnc) isoforms of known genes 2420 48.47107 4
Osa10LNT0071500.1 10 Osa10LNG0071500 14776372-14779039 long non-coding(lnc) isoforms of known genes 1295 47.18147 7
Osa10LNT0071700.1 10 Osa10LNG0071700 14869094-14872480 long non-coding(lnc) isoforms of known genes 2251 40.73745 5
Osa10LNT0071600.1 10 Osa10LNG0071600 14894291-14900908 sense lncRNA 4869 44.0953 4
Osa10LNT0071800.1 10 Osa10LNG0071800 14904210-14912952 long non-coding(lnc) isoforms of known genes 6867 43.1047 6
Osa10LNT0071800.2 10 Osa10LNG0071800 14904210-14912952 long non-coding(lnc) isoforms of known genes 6790 43.13697 6
Osa10LNT0071900.2 10 Osa10LNG0071900 14952758-14959713 long non-coding(lnc) isoforms of known genes 3773 43.28121 6
Osa10LNT0071900.1 10 Osa10LNG0071900 14952758-14959713 long non-coding(lnc) isoforms of known genes 3860 43.39378 5
Osa10LNT0574000.1 10 Osa10LNG0574000 15099345-15099562 intergenetic lncRNA (lincRNA) 218 48.16514 1
Osa10LNT0072000.1 10 Osa10LNG0072000 15191710-15194372 intergenetic lncRNA (lincRNA) 2524 39.02536 2
Osa10LNT0072100.1 10 Osa10LNG0072100 15220811-15223119 long non-coding(lnc) isoforms of known genes 1930 49.68912 3
Osa10LNT0072200.1 10 Osa10LNG0072200 15229583-15234593 long non-coding(lnc) isoforms of known genes 1655 51.72205 10
Osa10LNT0574100.1 10 Osa10LNG0574100 15278540-15278743 intergenetic lncRNA (lincRNA) 204 26.96078 1
Osa10LNT0060200.1 10 Osa10LNG0060200 1541239-1548037 long non-coding(lnc) isoforms of known genes 3359 44.83477 4
Osa10LNT0574200.1 10 Osa10LNG0574200 15513235-15513493 intergenetic lncRNA (lincRNA) 259 22.00772 1
Osa10LNT0072300.1 10 Osa10LNG0072300 15637609-15644400 long non-coding(lnc) isoforms of known genes 3038 49.04542 14
Osa10LNT0072400.1 10 Osa10LNG0072400 15689929-15693130 long non-coding(lnc) isoforms of known genes 1380 54.56522 11
Osa10LNT0072500.1 10 Osa10LNG0072500 15905329-15905600 intergenetic lncRNA (lincRNA) 272 72.42647 1
Osa10LNT0072600.1 10 Osa10LNG0072600 16084478-16086689 long non-coding(lnc) isoforms of known genes 1103 56.39166 5
Osa10LNT0072700.3 10 Osa10LNG0072700 16160566-16167894 long non-coding(lnc) isoforms of known genes 2826 50.03539 8
Osa10LNT0072700.2 10 Osa10LNG0072700 16160566-16167894 long non-coding(lnc) isoforms of known genes 2812 50.03556 8
Osa10LNT0072700.1 10 Osa10LNG0072700 16160566-16167894 long non-coding(lnc) isoforms of known genes 3967 45.62642 9
Osa10LNT0060300.1 10 Osa10LNG0060300 1631824-1634697 intergenetic lncRNA (lincRNA) 837 45.63919 3
Osa10LNT0072800.1 10 Osa10LNG0072800 16400111-16401593 intergenetic lncRNA (lincRNA) 1483 50.16858 1
Osa10LNT0072900.1 10 Osa10LNG0072900 16429083-16429924 sense lncRNA 782 55.24297 2
Osa10LNT0073000.1 10 Osa10LNG0073000 16665830-16673464 long non-coding(lnc) isoforms of known genes 1507 46.11812 10
Osa10LNT0073100.1 10 Osa10LNG0073100 16705082-16708492 long non-coding(lnc) isoforms of known genes 1186 55.64924 11
Osa10LNT0073200.1 10 Osa10LNG0073200 16736028-16737955 intergenetic lncRNA (lincRNA) 591 42.30118 6
Osa10LNT0574300.1 10 Osa10LNG0574300 16900501-16900744 intergenetic lncRNA (lincRNA) 244 38.52459 1
Osa10LNT0073300.1 10 Osa10LNG0073300 16981514-16989899 long non-coding(lnc) isoforms of known genes 1433 40.19539 5
Osa10LNT0060400.1 10 Osa10LNG0060400 1707619-1708347 intergenetic lncRNA (lincRNA) 633 40.60032 2
Osa10LNT0073400.1 10 Osa10LNG0073400 17089181-17090002 intergenetic lncRNA (lincRNA) 822 47.56691 1
Osa10LNT0073500.1 10 Osa10LNG0073500 17158126-17162522 long non-coding(lnc) isoforms of known genes 2627 42.13932 4
Osa10LNT0073500.3 10 Osa10LNG0073500 17158126-17162522 long non-coding(lnc) isoforms of known genes 3712 40.30172 3
Osa10LNT0073500.2 10 Osa10LNG0073500 17158126-17162522 long non-coding(lnc) isoforms of known genes 2174 44.34223 4
Osa10LNT0073600.1 10 Osa10LNG0073600 17184397-17185866 sense lncRNA 735 59.72789 2
Osa10LNT0073700.1 10 Osa10LNG0073700 17192343-17195661 long non-coding(lnc) isoforms of known genes 2718 49.37454 3
Osa10LNT0073700.2 10 Osa10LNG0073700 17192343-17195661 long non-coding(lnc) isoforms of known genes 2463 49.73609 4
Osa10LNT0060500.1 10 Osa10LNG0060500 1729343-1740063 long non-coding(lnc) isoforms of known genes 2660 47.44361 9
Osa10LNT0574400.1 10 Osa10LNG0574400 17293863-17294137 intergenetic lncRNA (lincRNA) 275 24.72727 1
Osa10LNT0574500.1 10 Osa10LNG0574500 17293863-17294137 intergenetic lncRNA (lincRNA) 275 24.72727 1
Osa10LNT0060600.1 10 Osa10LNG0060600 1743605-1746986 long non-coding(lnc) isoforms of known genes 3110 43.27974 3
Osa10LNT0073800.1 10 Osa10LNG0073800 17448995-17452214 long non-coding(lnc) isoforms of known genes 2535 39.48718 6
Osa10LNT0073900.1 10 Osa10LNG0073900 17475528-17483949 long non-coding(lnc) isoforms of known genes 3116 43.67779 16
Osa10LNT0074000.1 10 Osa10LNG0074000 17484941-17490739 long non-coding(lnc) isoforms of known genes 3573 44.97621 7
Osa10LNT0074100.1 10 Osa10LNG0074100 17584681-17592390 long non-coding(lnc) isoforms of known genes 3896 44.17351 17
Osa10LNT0074200.1 10 Osa10LNG0074200 17773484-17776920 long non-coding(lnc) isoforms of known genes 2434 47.65818 3
Osa10LNT0060700.1 10 Osa10LNG0060700 1779540-1782089 intergenetic lncRNA (lincRNA) 1599 45.84115 3
Osa10LNT0074300.1 10 Osa10LNG0074300 17869112-17869348 intronic lncRNA 237 27.00422 1
Osa10LNT0074400.1 10 Osa10LNG0074400 17906161-17910764 long non-coding(lnc) isoforms of known genes 1168 51.79795 10
Osa10LNT0074500.1 10 Osa10LNG0074500 17949628-17956845 long non-coding(lnc) isoforms of known genes 1265 44.03162 7
Osa10LNT0074600.2 10 Osa10LNG0074600 17960480-17964480 long non-coding(lnc) isoforms of known genes 1948 51.3347 7
Osa10LNT0074600.1 10 Osa10LNG0074600 17960480-17964480 long non-coding(lnc) isoforms of known genes 2159 53.17277 6
Osa10LNT0060800.1 10 Osa10LNG0060800 1799162-1801756 intergenetic lncRNA (lincRNA) 2595 41.46435 1
Osa10LNT0074700.2 10 Osa10LNG0074700 18153642-18156878 long non-coding(lnc) isoforms of known genes 1308 56.03976 5
Osa10LNT0074700.1 10 Osa10LNG0074700 18153642-18156878 long non-coding(lnc) isoforms of known genes 1661 50.93317 4
Osa10LNT0074800.1 10 Osa10LNG0074800 18297933-18300228 long non-coding(lnc) isoforms of known genes 2133 54.19597 2
Osa10LNT0074900.1 10 Osa10LNG0074900 18311868-18314316 long non-coding(lnc) isoforms of known genes 1580 48.98734 9
Osa10LNT0075000.1 10 Osa10LNG0075000 18321124-18331770 long non-coding(lnc) isoforms of known genes 3436 50.11641 17
Osa10LNT0075000.2 10 Osa10LNG0075000 18321124-18331770 long non-coding(lnc) isoforms of known genes 3384 50.20686 17
Osa10LNT0075100.1 10 Osa10LNG0075100 18409454-18409899 intergenetic lncRNA (lincRNA) 446 67.713 1
Osa10LNT0075200.1 10 Osa10LNG0075200 18571514-18575727 sense lncRNA 1716 51.98135 6
Osa10LNT0075200.2 10 Osa10LNG0075200 18571514-18575727 sense lncRNA 1557 53.56455 7
Osa10LNT0574600.1 10 Osa10LNG0574600 18580890-18581133 intergenetic lncRNA (lincRNA) 244 23.36066 1
Osa10LNT0574800.1 10 Osa10LNG0574800 18581200-18581472 intergenetic lncRNA (lincRNA) 273 25.64103 1
Osa10LNT0574700.1 10 Osa10LNG0574700 18581200-18581472 intergenetic lncRNA (lincRNA) 273 25.64103 1
Osa10LNT0060900.1 10 Osa10LNG0060900 1858234-1860626 long non-coding(lnc) isoforms of known genes 1310 47.8626 2
Osa10LNT0075300.1 10 Osa10LNG0075300 18642323-18644861 long non-coding(lnc) isoforms of known genes 1937 39.85545 3
Osa10LNT0075400.1 10 Osa10LNG0075400 18669611-18679020 long non-coding(lnc) isoforms of known genes 3631 50.12393 15
Osa10LNT0075500.1 10 Osa10LNG0075500 18687566-18693360 long non-coding(lnc) isoforms of known genes 2125 49.03529 11
Osa10LNT0075600.1 10 Osa10LNG0075600 18857871-18869428 long non-coding(lnc) isoforms of known genes 3789 45.52652 27
Osa10LNT0075700.1 10 Osa10LNG0075700 18989060-18991365 long non-coding(lnc) isoforms of known genes 1936 43.23347 4
Osa10LNT0075800.1 10 Osa10LNG0075800 18990072-18990702 Antisense lncRNA 468 41.88034 2
Osa10LNT0075900.2 10 Osa10LNG0075900 19040462-19040772 intergenetic lncRNA (lincRNA) 310 64.83871 1
Osa10LNT0075900.1 10 Osa10LNG0075900 19040462-19040772 intergenetic lncRNA (lincRNA) 311 64.63023 1
Osa10LNT0076000.1 10 Osa10LNG0076000 19053660-19053975 intergenetic lncRNA (lincRNA) 316 60.75949 1
Osa10LNT0076100.2 10 Osa10LNG0076100 19148232-19150903 long non-coding(lnc) isoforms of known genes 826 50.3632 3
Osa10LNT0076100.1 10 Osa10LNG0076100 19148232-19150903 long non-coding(lnc) isoforms of known genes 2558 42.18139 2
Osa10LNT0076200.1 10 Osa10LNG0076200 19201596-19206783 long non-coding(lnc) isoforms of known genes 2114 49.33775 16
Osa10LNT0061100.1 10 Osa10LNG0061100 1923010-1934111 Antisense lncRNA 675 39.40741 4
Osa10LNT0061300.1 10 Osa10LNG0061300 1929595-1929868 intergenetic lncRNA (lincRNA) 274 31.0219 1
Osa10LNT0061200.1 10 Osa10LNG0061200 1929595-1929868 intergenetic lncRNA (lincRNA) 274 31.0219 1
Osa10LNT0076300.1 10 Osa10LNG0076300 19334617-19335615 long non-coding(lnc) isoforms of known genes 977 49.02764 2
Osa10LNT0076400.1 10 Osa10LNG0076400 19352996-19354079 long non-coding(lnc) isoforms of known genes 554 40.0722 3
Osa10LNT0076400.2 10 Osa10LNG0076400 19352996-19354079 long non-coding(lnc) isoforms of known genes 551 39.9274 3
Osa10LNT0076500.1 10 Osa10LNG0076500 19415610-19418684 long non-coding(lnc) isoforms of known genes 1075 48.55814 9
Osa10LNT0574900.1 10 Osa10LNG0574900 19483190-19483450 intergenetic lncRNA (lincRNA) 261 54.02299 1
Osa10LNT0076600.1 10 Osa10LNG0076600 19517045-19525475 long non-coding(lnc) isoforms of known genes 4002 45.92704 17
Osa10LNT0076700.1 10 Osa10LNG0076700 19555089-19558369 long non-coding(lnc) isoforms of known genes 759 50.19763 4
Osa10LNT0076800.1 10 Osa10LNG0076800 19616370-19618360 long non-coding(lnc) isoforms of known genes 1584 52.14646 2
Osa10LNT0575000.1 10 Osa10LNG0575000 19821905-19822161 intergenetic lncRNA (lincRNA) 257 54.0856 1