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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs

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Transcript id Chrom Gene Location Classification Length GC Content(%) Exon Number
Osa06LNT0348700.1 6 Osa06LNG0348700 21343410-21350292 long non-coding(lnc) isoforms of known genes 3267 48.05632 12
Osa06LNT0508500.1 6 Osa06LNG0508500 21362055-21362327 intergenetic lncRNA (lincRNA) 273 27.47253 1
Osa06LNT0508600.1 6 Osa06LNG0508600 21362055-21362327 intergenetic lncRNA (lincRNA) 273 27.47253 1
Osa06LNT0348800.1 6 Osa06LNG0348800 21606849-21617120 long non-coding(lnc) isoforms of known genes 4729 45.46416 22
Osa06LNT0348800.2 6 Osa06LNG0348800 21606849-21617120 long non-coding(lnc) isoforms of known genes 3957 44.57923 20
Osa06LNT0326700.2 6 Osa06LNG0326700 2162738-2169698 long non-coding(lnc) isoforms of known genes 1323 54.34618 5
Osa06LNT0326700.1 6 Osa06LNG0326700 2162738-2169698 long non-coding(lnc) isoforms of known genes 1318 54.32473 5
Osa06LNT0348900.1 6 Osa06LNG0348900 21637467-21641982 long non-coding(lnc) isoforms of known genes 3648 42.87281 10
Osa06LNT0508700.1 6 Osa06LNG0508700 21646590-21646810 intergenetic lncRNA (lincRNA) 221 26.69683 1
Osa06LNT0349000.1 6 Osa06LNG0349000 21856766-21858211 intergenetic lncRNA (lincRNA) 1446 35.47718 1
Osa06LNT0349100.1 6 Osa06LNG0349100 21940214-21942985 intergenetic lncRNA (lincRNA) 1687 43.92413 2
Osa06LNT0349200.1 6 Osa06LNG0349200 21993390-21993693 intergenetic lncRNA (lincRNA) 304 45.06579 1
Osa06LNT0508800.1 6 Osa06LNG0508800 22019720-22019994 intergenetic lncRNA (lincRNA) 275 25.09091 1
Osa06LNT0508900.1 6 Osa06LNG0508900 22020361-22020599 intergenetic lncRNA (lincRNA) 239 41.841 1
Osa06LNT0349300.1 6 Osa06LNG0349300 22020872-22024774 long non-coding(lnc) isoforms of known genes 2215 45.68849 5
Osa06LNT0349400.1 6 Osa06LNG0349400 22073976-22079683 long non-coding(lnc) isoforms of known genes 1917 52.42567 7
Osa06LNT0326800.1 6 Osa06LNG0326800 2208765-2209556 long non-coding(lnc) isoforms of known genes 568 57.04225 3
Osa06LNT0349500.2 6 Osa06LNG0349500 22123353-22127346 long non-coding(lnc) isoforms of known genes 1829 47.56698 12
Osa06LNT0349500.1 6 Osa06LNG0349500 22123353-22127346 long non-coding(lnc) isoforms of known genes 1704 48.18075 12
Osa06LNT0326900.1 6 Osa06LNG0326900 2231565-2233725 Antisense lncRNA 479 47.3904 2
Osa06LNT0509100.1 6 Osa06LNG0509100 22369133-22369407 intronic lncRNA 275 23.63636 1
Osa06LNT0509000.1 6 Osa06LNG0509000 22369133-22369407 intronic lncRNA 275 23.63636 1
Osa06LNT0509300.1 6 Osa06LNG0509300 22369474-22369718 intronic lncRNA 245 26.93878 1
Osa06LNT0509200.1 6 Osa06LNG0509200 22369474-22369718 intronic lncRNA 245 26.93878 1
Osa06LNT0509400.1 6 Osa06LNG0509400 22373735-22373979 intergenetic lncRNA (lincRNA) 245 25.30612 1
Osa06LNT0509500.1 6 Osa06LNG0509500 22374046-22374321 intergenetic lncRNA (lincRNA) 276 26.81159 1
Osa06LNT0509600.1 6 Osa06LNG0509600 22380991-22381265 intergenetic lncRNA (lincRNA) 275 25.45455 1
Osa06LNT0509700.1 6 Osa06LNG0509700 22380991-22381265 intergenetic lncRNA (lincRNA) 275 25.45455 1
Osa06LNT0509800.1 6 Osa06LNG0509800 22492547-22492893 intergenetic lncRNA (lincRNA) 347 32.56484 1
Osa06LNT0327000.1 6 Osa06LNG0327000 2251031-2256626 long non-coding(lnc) isoforms of known genes 2812 45.55477 11
Osa06LNT0509900.1 6 Osa06LNG0509900 22567488-22567688 intergenetic lncRNA (lincRNA) 201 23.38308 1
Osa06LNT0349600.1 6 Osa06LNG0349600 22794577-22800135 long non-coding(lnc) isoforms of known genes 1976 53.03644 5
Osa06LNT0349700.1 6 Osa06LNG0349700 22856115-22856945 intergenetic lncRNA (lincRNA) 831 51.26354 1
Osa06LNT0327200.3 6 Osa06LNG0327200 2285947-2289982 sense lncRNA 3269 42.64301 4
Osa06LNT0327200.2 6 Osa06LNG0327200 2285947-2289982 sense lncRNA 1767 50.31126 5
Osa06LNT0327200.1 6 Osa06LNG0327200 2285947-2289982 sense lncRNA 2021 48.63929 5
Osa06LNT0327200.4 6 Osa06LNG0327200 2285947-2289982 sense lncRNA 1878 49.73376 6
Osa06LNT0349800.1 6 Osa06LNG0349800 22953242-22955664 Antisense lncRNA 290 52.75862 2
Osa06LNT0349900.1 6 Osa06LNG0349900 22956669-22962696 long non-coding(lnc) isoforms of known genes 977 56.9089 4
Osa06LNT0327100.1 6 Osa06LNG0327100 2300677-2301294 intergenetic lncRNA (lincRNA) 618 37.54045 1
Osa06LNT0350000.1 6 Osa06LNG0350000 23009014-23009898 intergenetic lncRNA (lincRNA) 798 49.74937 2
Osa06LNT0350100.1 6 Osa06LNG0350100 23013152-23021462 long non-coding(lnc) isoforms of known genes 1240 53.87097 3
Osa06LNT0350200.1 6 Osa06LNG0350200 23096847-23098167 long non-coding(lnc) isoforms of known genes 318 59.43396 2
Osa06LNT0327300.1 6 Osa06LNG0327300 2320914-2329651 long non-coding(lnc) isoforms of known genes 3356 44.42789 25
Osa06LNT0510000.1 6 Osa06LNG0510000 23403970-23404217 intergenetic lncRNA (lincRNA) 248 35.8871 1
Osa06LNT0350300.1 6 Osa06LNG0350300 23442875-23449447 long non-coding(lnc) isoforms of known genes 3657 50.53322 5
Osa06LNT0510100.1 6 Osa06LNG0510100 23455120-23455394 intergenetic lncRNA (lincRNA) 275 25.45455 1
Osa06LNT0510200.1 6 Osa06LNG0510200 23494164-23494401 intergenetic lncRNA (lincRNA) 238 29.41176 1
Osa06LNT0327400.3 6 Osa06LNG0327400 2358310-2365515 long non-coding(lnc) isoforms of known genes 2046 44.91691 15
Osa06LNT0327400.2 6 Osa06LNG0327400 2358310-2365515 long non-coding(lnc) isoforms of known genes 1596 44.61153 15