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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs

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Transcript id Chrom Gene Location Classification Length GC Content(%) Exon Number
Osa06LNT0356100.1 6 Osa06LNG0356100 27428890-27431107 long non-coding(lnc) isoforms of known genes 1903 50.86705 2
Osa06LNT0356600.1 6 Osa06LNG0356600 27492866-27499531 long non-coding(lnc) isoforms of known genes 2365 56.06765 12
Osa06LNT0356700.1 6 Osa06LNG0356700 27545628-27546423 intergenetic lncRNA (lincRNA) 796 55.65327 1
Osa06LNT0511000.1 6 Osa06LNG0511000 27574529-27574736 intergenetic lncRNA (lincRNA) 208 37.5 1
Osa06LNT0356800.1 6 Osa06LNG0356800 27654732-27654962 Antisense lncRNA 231 51.08225 1
Osa06LNT0324000.1 6 Osa06LNG0324000 276729-282165 long non-coding(lnc) isoforms of known genes 2707 46.69376 14
Osa06LNT0324000.3 6 Osa06LNG0324000 276729-282165 long non-coding(lnc) isoforms of known genes 2711 46.66175 14
Osa06LNT0324000.2 6 Osa06LNG0324000 276729-282165 long non-coding(lnc) isoforms of known genes 2548 46.93878 15
Osa06LNT0511100.1 6 Osa06LNG0511100 27674746-27674951 intergenetic lncRNA (lincRNA) 206 45.14563 1
Osa06LNT0356900.1 6 Osa06LNG0356900 27708558-27718445 long non-coding(lnc) isoforms of known genes 4943 43.37447 17
Osa06LNT0356900.2 6 Osa06LNG0356900 27708558-27718445 long non-coding(lnc) isoforms of known genes 4040 43.5396 15
Osa06LNT0357000.1 6 Osa06LNG0357000 27734973-27740719 long non-coding(lnc) isoforms of known genes 1513 50.82617 9
Osa06LNT0328400.3 6 Osa06LNG0328400 2774537-2779814 long non-coding(lnc) isoforms of known genes 1143 46.89414 8
Osa06LNT0328400.1 6 Osa06LNG0328400 2774537-2779814 long non-coding(lnc) isoforms of known genes 1650 43.45455 6
Osa06LNT0328400.2 6 Osa06LNG0328400 2774537-2779814 long non-coding(lnc) isoforms of known genes 1042 47.98464 7
Osa06LNT0357100.1 6 Osa06LNG0357100 27814803-27815748 intergenetic lncRNA (lincRNA) 801 39.70037 2
Osa06LNT0357300.1 6 Osa06LNG0357300 27923555-27926275 sense lncRNA 938 49.25373 3
Osa06LNT0357200.1 6 Osa06LNG0357200 27929735-27932433 long non-coding(lnc) isoforms of known genes 867 47.2895 3
Osa06LNT0357400.1 6 Osa06LNG0357400 27953257-27956709 sense lncRNA 1483 49.02225 2
Osa06LNT0357500.3 6 Osa06LNG0357500 27960874-27971394 long non-coding(lnc) isoforms of known genes 681 43.46549 6
Osa06LNT0357500.1 6 Osa06LNG0357500 27960874-27971394 long non-coding(lnc) isoforms of known genes 234 42.73504 3
Osa06LNT0357500.2 6 Osa06LNG0357500 27960874-27971394 long non-coding(lnc) isoforms of known genes 641 43.83775 5
Osa06LNT0511200.1 6 Osa06LNG0511200 27997452-27997665 intergenetic lncRNA (lincRNA) 214 39.25234 1
Osa06LNT0357600.1 6 Osa06LNG0357600 28059549-28065151 long non-coding(lnc) isoforms of known genes 2112 45.73864 14
Osa06LNT0357700.1 6 Osa06LNG0357700 28173143-28174156 intergenetic lncRNA (lincRNA) 1014 45.26627 1
Osa06LNT0357800.1 6 Osa06LNG0357800 28183101-28183908 intergenetic lncRNA (lincRNA) 808 34.5297 1
Osa06LNT0357900.1 6 Osa06LNG0357900 28191068-28196198 long non-coding(lnc) isoforms of known genes 1971 46.72755 11
Osa06LNT0358100.1 6 Osa06LNG0358100 28208657-28234184 long non-coding(lnc) isoforms of known genes 10449 40.24309 39
Osa06LNT0496700.1 6 Osa06LNG0496700 2827563-2827765 intergenetic lncRNA (lincRNA) 203 22.6601 1
Osa06LNT0358000.2 6 Osa06LNG0358000 28281180-28285338 long non-coding(lnc) isoforms of known genes 1593 50.09416 6
Osa06LNT0358000.1 6 Osa06LNG0358000 28281180-28285338 long non-coding(lnc) isoforms of known genes 2231 45.85388 5
Osa06LNT0358200.1 6 Osa06LNG0358200 28390431-28396001 long non-coding(lnc) isoforms of known genes 3082 43.64049 6
Osa06LNT0358200.2 6 Osa06LNG0358200 28390431-28396001 long non-coding(lnc) isoforms of known genes 795 54.96855 3
Osa06LNT0511300.1 6 Osa06LNG0511300 28442533-28442789 intergenetic lncRNA (lincRNA) 257 28.01556 1
Osa06LNT0358400.1 6 Osa06LNG0358400 28457982-28463484 long non-coding(lnc) isoforms of known genes 3098 43.86701 10
Osa06LNT0358300.2 6 Osa06LNG0358300 28463798-28466237 long non-coding(lnc) isoforms of known genes 1592 49.5603 5
Osa06LNT0358300.1 6 Osa06LNG0358300 28463798-28466237 long non-coding(lnc) isoforms of known genes 1908 47.48428 4
Osa06LNT0358500.1 6 Osa06LNG0358500 28504187-28508822 long non-coding(lnc) isoforms of known genes 2433 42.66338 10
Osa06LNT0358600.1 6 Osa06LNG0358600 28639414-28641655 intergenetic lncRNA (lincRNA) 589 50.93379 4
Osa06LNT0358700.1 6 Osa06LNG0358700 28658265-28662647 long non-coding(lnc) isoforms of known genes 1974 49.54407 11
Osa06LNT0358800.1 6 Osa06LNG0358800 28682065-28687077 long non-coding(lnc) isoforms of known genes 2122 49.05749 14
Osa06LNT0496800.1 6 Osa06LNG0496800 2868835-2869039 intergenetic lncRNA (lincRNA) 205 22.43902 1
Osa06LNT0358900.1 6 Osa06LNG0358900 28706875-28708349 long non-coding(lnc) isoforms of known genes 803 52.92653 3
Osa06LNT0359000.1 6 Osa06LNG0359000 28807709-28815595 long non-coding(lnc) isoforms of known genes 3332 41.14646 17
Osa06LNT0359100.1 6 Osa06LNG0359100 28969545-28974541 long non-coding(lnc) isoforms of known genes 2470 50.93117 3
Osa06LNT0359200.1 6 Osa06LNG0359200 28988099-28990115 long non-coding(lnc) isoforms of known genes 1795 40.89136 2
Osa06LNT0359300.1 6 Osa06LNG0359300 28989047-28989940 Antisense lncRNA 526 38.97338 3
Osa06LNT0328500.1 6 Osa06LNG0328500 2908148-2910469 long non-coding(lnc) isoforms of known genes 1358 57.58468 4
Osa06LNT0328600.1 6 Osa06LNG0328600 2908506-2910062 sense lncRNA 785 57.07006 2
Osa06LNT0359400.1 6 Osa06LNG0359400 29173235-29175519 long non-coding(lnc) isoforms of known genes 670 49.25373 5