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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs

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Transcript id Chrom Gene Location Classification Length GC Content(%) Exon Number
Osa06LNT0331800.1 6 Osa06LNG0331800 4870920-4874735 long non-coding(lnc) isoforms of known genes 2528 46.99367 3
Osa06LNT0332100.1 6 Osa06LNG0332100 4918893-4919297 intergenetic lncRNA (lincRNA) 405 69.1358 1
Osa06LNT0497300.1 6 Osa06LNG0497300 4993658-4993902 intergenetic lncRNA (lincRNA) 245 27.34694 1
Osa06LNT0497400.1 6 Osa06LNG0497400 4993658-4993902 intergenetic lncRNA (lincRNA) 245 27.34694 1
Osa06LNT0497500.1 6 Osa06LNG0497500 4993969-4994243 intergenetic lncRNA (lincRNA) 275 25.09091 1
Osa06LNT0497600.1 6 Osa06LNG0497600 4993969-4994243 intergenetic lncRNA (lincRNA) 275 25.09091 1
Osa06LNT0497700.1 6 Osa06LNG0497700 4994427-4994688 intergenetic lncRNA (lincRNA) 262 41.22137 1
Osa06LNT0332200.1 6 Osa06LNG0332200 5005417-5008049 sense lncRNA 911 49.17673 3
Osa06LNT0332300.1 6 Osa06LNG0332300 5012418-5016651 long non-coding(lnc) isoforms of known genes 1260 44.28571 6
Osa06LNT0332400.2 6 Osa06LNG0332400 5024373-5034803 long non-coding(lnc) isoforms of known genes 6597 39.60891 7
Osa06LNT0332400.1 6 Osa06LNG0332400 5024373-5034803 long non-coding(lnc) isoforms of known genes 4814 44.30827 9
Osa06LNT0332500.1 6 Osa06LNG0332500 5054918-5056798 long non-coding(lnc) isoforms of known genes 1104 47.19203 3
Osa06LNT0332600.1 6 Osa06LNG0332600 5088086-5097867 sense lncRNA 1114 50.8079 2
Osa06LNT0332700.1 6 Osa06LNG0332700 5186447-5188307 long non-coding(lnc) isoforms of known genes 1537 40.85882 4
Osa06LNT0332800.1 6 Osa06LNG0332800 5276714-5286101 long non-coding(lnc) isoforms of known genes 1684 47.56532 18
Osa06LNT0332800.2 6 Osa06LNG0332800 5276714-5286101 long non-coding(lnc) isoforms of known genes 2955 43.35025 17
Osa06LNT0332900.1 6 Osa06LNG0332900 5354162-5354800 intergenetic lncRNA (lincRNA) 639 66.51017 1
Osa06LNT0333000.1 6 Osa06LNG0333000 5409030-5410024 sense lncRNA 735 50.61224 2
Osa06LNT0333100.1 6 Osa06LNG0333100 5461149-5471936 long non-coding(lnc) isoforms of known genes 2758 44.23495 13
Osa06LNT0333200.1 6 Osa06LNG0333200 5523839-5530352 long non-coding(lnc) isoforms of known genes 3053 46.60989 22
Osa06LNT0497800.1 6 Osa06LNG0497800 5563271-5563484 intergenetic lncRNA (lincRNA) 214 56.54206 1
Osa06LNT0333400.1 6 Osa06LNG0333400 5575897-5583890 long non-coding(lnc) isoforms of known genes 3515 43.32859 19
Osa06LNT0333300.1 6 Osa06LNG0333300 5601778-5604982 long non-coding(lnc) isoforms of known genes 870 51.26437 2
Osa06LNT0497900.1 6 Osa06LNG0497900 5754034-5754234 intergenetic lncRNA (lincRNA) 201 33.33333 1
Osa06LNT0333600.1 6 Osa06LNG0333600 5773657-5777294 long non-coding(lnc) isoforms of known genes 1270 56.77165 8
Osa06LNT0333500.1 6 Osa06LNG0333500 5778734-5779505 intergenetic lncRNA (lincRNA) 772 55.18135 1
Osa06LNT0333700.1 6 Osa06LNG0333700 5784199-5786277 long non-coding(lnc) isoforms of known genes 1990 39.74874 2
Osa06LNT0333800.1 6 Osa06LNG0333800 5837535-5844481 long non-coding(lnc) isoforms of known genes 2725 57.46789 12
Osa06LNT0333900.1 6 Osa06LNG0333900 5857430-5861115 long non-coding(lnc) isoforms of known genes 1055 47.39336 6
Osa06LNT0334000.1 6 Osa06LNG0334000 5918191-5919676 sense lncRNA 1367 57.20556 2
Osa06LNT0334100.1 6 Osa06LNG0334100 5977401-5980737 long non-coding(lnc) isoforms of known genes 1113 56.33423 5
Osa06LNT0334200.1 6 Osa06LNG0334200 5982681-5998715 long non-coding(lnc) isoforms of known genes 4057 44.34311 23
Osa06LNT0334400.2 6 Osa06LNG0334400 6036739-6046262 long non-coding(lnc) isoforms of known genes 2132 46.81051 19
Osa06LNT0334400.1 6 Osa06LNG0334400 6036739-6046262 long non-coding(lnc) isoforms of known genes 2128 46.80451 19
Osa06LNT0334300.1 6 Osa06LNG0334300 6046744-6050316 long non-coding(lnc) isoforms of known genes 3314 42.45625 4
Osa06LNT0334600.2 6 Osa06LNG0334600 6088114-6097660 long non-coding(lnc) isoforms of known genes 3079 44.46249 21
Osa06LNT0334600.1 6 Osa06LNG0334600 6088114-6097660 long non-coding(lnc) isoforms of known genes 2809 44.92702 21
Osa06LNT0334500.1 6 Osa06LNG0334500 6152002-6153244 sense lncRNA 1106 63.6528 2
Osa06LNT0334700.1 6 Osa06LNG0334700 6243743-6247717 long non-coding(lnc) isoforms of known genes 1699 48.02825 7
Osa06LNT0334800.1 6 Osa06LNG0334800 6277319-6280812 long non-coding(lnc) isoforms of known genes 893 48.1523 7
Osa06LNT0324300.1 6 Osa06LNG0324300 629986-633799 long non-coding(lnc) isoforms of known genes 3017 50.04972 8
Osa06LNT0324300.2 6 Osa06LNG0324300 629986-633799 long non-coding(lnc) isoforms of known genes 3028 50.06605 8
Osa06LNT0334900.1 6 Osa06LNG0334900 6440527-6447589 long non-coding(lnc) isoforms of known genes 2625 42.78095 7
Osa06LNT0335000.1 6 Osa06LNG0335000 6477679-6478637 intronic lncRNA 598 45.1505 2
Osa06LNT0335100.1 6 Osa06LNG0335100 6489534-6493821 long non-coding(lnc) isoforms of known genes 705 54.46809 4
Osa06LNT0335100.2 6 Osa06LNG0335100 6489534-6493821 long non-coding(lnc) isoforms of known genes 700 54.57143 4
Osa06LNT0498100.1 6 Osa06LNG0498100 6499654-6499903 intergenetic lncRNA (lincRNA) 250 27.6 1
Osa06LNT0498000.1 6 Osa06LNG0498000 6499654-6499903 intergenetic lncRNA (lincRNA) 250 27.6 1
Osa06LNT0335200.1 6 Osa06LNG0335200 6503743-6514424 long non-coding(lnc) isoforms of known genes 3496 49.39931 24
Osa06LNT0335300.1 6 Osa06LNG0335300 6648430-6652995 long non-coding(lnc) isoforms of known genes 2203 51.88379 4