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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs

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Transcript id Chrom Gene Location Classification Length GC Content(%) Exon Number
Osa10LNT0077000.1 10 Osa10LNG0077000 19928993-19930875 long non-coding(lnc) isoforms of known genes 1485 50.37037 3
Osa10LNT0077100.1 10 Osa10LNG0077100 19930865-19933772 sense lncRNA 2774 58.32733 2
Osa10LNT0077200.1 10 Osa10LNG0077200 19931783-19933772 intergenetic lncRNA (lincRNA) 1270 60.15748 2
Osa10LNT0076900.1 10 Osa10LNG0076900 19952720-19957356 sense lncRNA 2382 54.65995 4
Osa10LNT0061000.1 10 Osa10LNG0061000 1998837-1999833 long non-coding(lnc) isoforms of known genes 897 50.9476 2
Osa10LNT0077300.1 10 Osa10LNG0077300 20028820-20031330 long non-coding(lnc) isoforms of known genes 756 53.43915 4
Osa10LNT0077400.1 10 Osa10LNG0077400 20160992-20162746 long non-coding(lnc) isoforms of known genes 941 53.87885 3
Osa10LNT0077500.1 10 Osa10LNG0077500 20185307-20189615 long non-coding(lnc) isoforms of known genes 2096 51.66985 10
Osa10LNT0077600.1 10 Osa10LNG0077600 20438295-20438530 intergenetic lncRNA (lincRNA) 236 27.9661 1
Osa10LNT0575100.1 10 Osa10LNG0575100 20466676-20467201 intergenetic lncRNA (lincRNA) 526 35.55133 1
Osa10LNT0077700.1 10 Osa10LNG0077700 20719178-20722861 sense lncRNA 3565 45.8906 2
Osa10LNT0077800.1 10 Osa10LNG0077800 20751003-20756188 intergenetic lncRNA (lincRNA) 296 46.28378 2
Osa10LNT0058800.1 10 Osa10LNG0058800 208177-209486 intergenetic lncRNA (lincRNA) 1310 58.9313 1
Osa10LNT0077900.2 10 Osa10LNG0077900 20929638-20933550 long non-coding(lnc) isoforms of known genes 3261 41.24502 4
Osa10LNT0077900.1 10 Osa10LNG0077900 20929638-20933550 long non-coding(lnc) isoforms of known genes 3362 41.43367 5
Osa10LNT0078000.2 10 Osa10LNG0078000 20940600-20945224 long non-coding(lnc) isoforms of known genes 4744 45.19393 6
Osa10LNT0078000.1 10 Osa10LNG0078000 20940600-20945224 long non-coding(lnc) isoforms of known genes 3243 43.57077 6
Osa10LNT0078100.1 10 Osa10LNG0078100 21065640-21066711 intergenetic lncRNA (lincRNA) 762 40.02625 4
Osa10LNT0078200.1 10 Osa10LNG0078200 21109492-21114443 long non-coding(lnc) isoforms of known genes 2958 48.74915 12
Osa10LNT0078300.1 10 Osa10LNG0078300 21311755-21315379 long non-coding(lnc) isoforms of known genes 2313 46.00086 3
Osa10LNT0078300.2 10 Osa10LNG0078300 21311755-21315379 long non-coding(lnc) isoforms of known genes 1889 52.14399 3
Osa10LNT0078400.3 10 Osa10LNG0078400 21389812-21399820 sense lncRNA 5102 41.53273 9
Osa10LNT0078400.2 10 Osa10LNG0078400 21389812-21399820 sense lncRNA 5102 41.53273 10
Osa10LNT0078400.1 10 Osa10LNG0078400 21389812-21399820 sense lncRNA 5559 41.26641 9
Osa10LNT0078500.1 10 Osa10LNG0078500 21394330-21394684 Antisense lncRNA 271 39.11439 2
Osa10LNT0078600.1 10 Osa10LNG0078600 21440286-21443621 long non-coding(lnc) isoforms of known genes 1284 51.94704 10
Osa10LNT0078600.2 10 Osa10LNG0078600 21440286-21443621 long non-coding(lnc) isoforms of known genes 1775 50.8169 10
Osa10LNT0078700.1 10 Osa10LNG0078700 21445880-21453580 long non-coding(lnc) isoforms of known genes 4314 47.4038 20
Osa10LNT0078800.1 10 Osa10LNG0078800 21479351-21481798 long non-coding(lnc) isoforms of known genes 1498 43.39119 7
Osa10LNT0078900.1 10 Osa10LNG0078900 21504635-21505910 intergenetic lncRNA (lincRNA) 1095 41.00457 3
Osa10LNT0575200.1 10 Osa10LNG0575200 21526950-21527192 intronic lncRNA 243 33.74486 1
Osa10LNT0079000.1 10 Osa10LNG0079000 21707054-21710942 long non-coding(lnc) isoforms of known genes 1747 44.30452 11
Osa10LNT0079100.1 10 Osa10LNG0079100 21774188-21776862 long non-coding(lnc) isoforms of known genes 1420 65.0 7
Osa10LNT0079400.1 10 Osa10LNG0079400 21988742-21993690 long non-coding(lnc) isoforms of known genes 3957 43.39146 6
Osa10LNT0079400.2 10 Osa10LNG0079400 21988742-21993690 long non-coding(lnc) isoforms of known genes 4178 43.01101 5
Osa10LNT0079500.2 10 Osa10LNG0079500 21989161-21990546 sense lncRNA 758 46.43799 4
Osa10LNT0079500.1 10 Osa10LNG0079500 21989161-21990546 sense lncRNA 865 42.42775 2
Osa10LNT0079600.2 10 Osa10LNG0079600 21991294-21992306 Antisense lncRNA 605 42.47934 4
Osa10LNT0079600.1 10 Osa10LNG0079600 21991294-21992306 Antisense lncRNA 720 41.94444 3
Osa10LNT0079600.3 10 Osa10LNG0079600 21991294-21992306 Antisense lncRNA 637 41.44427 3
Osa10LNT0079700.1 10 Osa10LNG0079700 21992431-21993492 Antisense lncRNA 552 45.28986 4
Osa10LNT0079200.1 10 Osa10LNG0079200 21995563-21999001 long non-coding(lnc) isoforms of known genes 1638 43.04029 4
Osa10LNT0575300.1 10 Osa10LNG0575300 21999847-22000063 intergenetic lncRNA (lincRNA) 217 39.63134 1
Osa10LNT0575400.1 10 Osa10LNG0575400 21999847-22000063 intergenetic lncRNA (lincRNA) 217 39.63134 1
Osa10LNT0575500.1 10 Osa10LNG0575500 22001122-22001366 intergenetic lncRNA (lincRNA) 245 27.7551 1
Osa10LNT0079300.1 10 Osa10LNG0079300 22006968-22009949 intergenetic lncRNA (lincRNA) 782 57.54476 4
Osa10LNT0079800.2 10 Osa10LNG0079800 22024205-22029722 long non-coding(lnc) isoforms of known genes 1991 43.99799 9
Osa10LNT0079800.1 10 Osa10LNG0079800 22024205-22029722 long non-coding(lnc) isoforms of known genes 1988 43.96378 9
Osa10LNT0079900.1 10 Osa10LNG0079900 22030634-22036252 long non-coding(lnc) isoforms of known genes 3906 46.03175 9
Osa10LNT0080000.1 10 Osa10LNG0080000 22080046-22083302 long non-coding(lnc) isoforms of known genes 1360 49.92647 9
Osa10LNT0568500.1 10 Osa10LNG0568500 221177-221415 intergenetic lncRNA (lincRNA) 239 28.87029 1
Osa10LNT0080100.1 10 Osa10LNG0080100 22161308-22164662 long non-coding(lnc) isoforms of known genes 1620 47.09877 5
Osa10LNT0080200.1 10 Osa10LNG0080200 22174939-22175219 Antisense lncRNA 281 48.0427 1
Osa10LNT0061400.2 10 Osa10LNG0061400 2238989-2242715 long non-coding(lnc) isoforms of known genes 3592 49.66592 4
Osa10LNT0061400.1 10 Osa10LNG0061400 2238989-2242715 long non-coding(lnc) isoforms of known genes 2893 43.00035 3
Osa10LNT0080300.1 10 Osa10LNG0080300 22503330-22510131 long non-coding(lnc) isoforms of known genes 2343 48.18609 16
Osa10LNT0080400.1 10 Osa10LNG0080400 22604393-22605233 intergenetic lncRNA (lincRNA) 434 49.07834 2
Osa10LNT0080600.1 10 Osa10LNG0080600 22682194-22684955 long non-coding(lnc) isoforms of known genes 2613 40.29851 2
Osa10LNT0080700.1 10 Osa10LNG0080700 22697411-22698939 intergenetic lncRNA (lincRNA) 836 39.11483 3
Osa10LNT0080800.1 10 Osa10LNG0080800 22699144-22707110 long non-coding(lnc) isoforms of known genes 5149 44.29986 11
Osa10LNT0575600.1 10 Osa10LNG0575600 22712123-22712344 intergenetic lncRNA (lincRNA) 222 29.72973 1
Osa10LNT0080500.1 10 Osa10LNG0080500 22729855-22734078 intergenetic lncRNA (lincRNA) 1618 38.1953 6
Osa10LNT0061500.1 10 Osa10LNG0061500 2274692-2279479 intergenetic lncRNA (lincRNA) 1276 53.9185 3
Osa10LNT0081000.1 10 Osa10LNG0081000 22829218-22829591 intergenetic lncRNA (lincRNA) 374 38.50267 1
Osa10LNT0080900.1 10 Osa10LNG0080900 22829218-22831335 long non-coding(lnc) isoforms of known genes 1333 53.41335 3
Osa10LNT0081100.1 10 Osa10LNG0081100 22861455-22876432 long non-coding(lnc) isoforms of known genes 8569 47.95192 22
Osa10LNT0061600.1 10 Osa10LNG0061600 2288939-2292441 sense lncRNA 859 44.00466 2
Osa10LNT0081200.1 10 Osa10LNG0081200 22922968-22932829 long non-coding(lnc) isoforms of known genes 4801 44.80317 19
Osa10LNT0081300.1 10 Osa10LNG0081300 22936851-22939164 long non-coding(lnc) isoforms of known genes 1497 49.4322 4
Osa10LNT0081400.1 10 Osa10LNG0081400 22964272-22965575 long non-coding(lnc) isoforms of known genes 1110 61.8018 3
Osa10LNT0081500.1 10 Osa10LNG0081500 22994748-22998785 sense lncRNA 1225 69.79592 2
Osa10LNT0081600.1 10 Osa10LNG0081600 23035367-23039656 long non-coding(lnc) isoforms of known genes 2443 43.79861 8
Osa10LNT0081700.1 10 Osa10LNG0081700 23096136-23098790 long non-coding(lnc) isoforms of known genes 1722 40.76655 6
Osa10LNT0081700.2 10 Osa10LNG0081700 23096136-23098790 long non-coding(lnc) isoforms of known genes 381 50.13123 2
Osa10LNT0081800.1 10 Osa10LNG0081800 23142793-23144188 long non-coding(lnc) isoforms of known genes 1164 51.97595 3
Osa10LNT0081900.1 10 Osa10LNG0081900 23195820-23206256 long non-coding(lnc) isoforms of known genes 5736 42.01534 19
Osa10LNT0569300.1 10 Osa10LNG0569300 2460997-2461243 intergenetic lncRNA (lincRNA) 247 51.01215 1
Osa10LNT0568600.1 10 Osa10LNG0568600 246127-246401 intronic lncRNA 275 24.72727 1
Osa10LNT0568700.1 10 Osa10LNG0568700 246127-246401 intronic lncRNA 275 24.72727 1
Osa10LNT0061700.1 10 Osa10LNG0061700 2755985-2757182 intergenetic lncRNA (lincRNA) 1198 51.91987 1
Osa10LNT0058900.1 10 Osa10LNG0058900 284721-286945 sense lncRNA 1434 52.71967 3
Osa10LNT0061800.1 10 Osa10LNG0061800 2925418-2934113 long non-coding(lnc) isoforms of known genes 2101 48.26273 8
Osa10LNT0569400.1 10 Osa10LNG0569400 2987588-2987863 intergenetic lncRNA (lincRNA) 276 41.66667 1
Osa10LNT0061900.1 10 Osa10LNG0061900 3793940-3803817 long non-coding(lnc) isoforms of known genes 1879 47.73816 9
Osa10LNT0062000.1 10 Osa10LNG0062000 3897383-3900229 long non-coding(lnc) isoforms of known genes 1347 49.96288 4
Osa10LNT0062100.1 10 Osa10LNG0062100 3940942-3942033 sense lncRNA 1006 55.4672 2
Osa10LNT0062200.1 10 Osa10LNG0062200 3961362-3968592 sense lncRNA 1969 52.7679 4
Osa10LNT0569500.1 10 Osa10LNG0569500 3972548-3972753 intergenetic lncRNA (lincRNA) 206 28.15534 1
Osa10LNT0569600.1 10 Osa10LNG0569600 4012173-4012374 intergenetic lncRNA (lincRNA) 202 30.19802 1
Osa10LNT0569700.1 10 Osa10LNG0569700 4083317-4083589 intergenetic lncRNA (lincRNA) 273 26.73993 1
Osa10LNT0569900.1 10 Osa10LNG0569900 4083656-4083899 intergenetic lncRNA (lincRNA) 244 25.40984 1
Osa10LNT0569800.1 10 Osa10LNG0569800 4083656-4083899 intergenetic lncRNA (lincRNA) 244 25.40984 1
Osa10LNT0062300.1 10 Osa10LNG0062300 4121242-4124176 intergenetic lncRNA (lincRNA) 2660 41.35338 2
Osa10LNT0062300.2 10 Osa10LNG0062300 4121242-4124176 intergenetic lncRNA (lincRNA) 2089 42.7956 4
Osa10LNT0062400.2 10 Osa10LNG0062400 4164659-4167593 intergenetic lncRNA (lincRNA) 2089 42.7956 4
Osa10LNT0062400.1 10 Osa10LNG0062400 4164659-4167593 intergenetic lncRNA (lincRNA) 2660 41.35338 2
Osa10LNT0062500.1 10 Osa10LNG0062500 4336451-4336766 intergenetic lncRNA (lincRNA) 316 46.83544 1
Osa10LNT0570000.1 10 Osa10LNG0570000 4561097-4561328 intergenetic lncRNA (lincRNA) 232 24.56897 1
Osa10LNT0062700.2 10 Osa10LNG0062700 4663188-4667087 long non-coding(lnc) isoforms of known genes 1743 58.11819 9
Osa10LNT0062700.1 10 Osa10LNG0062700 4663188-4667087 long non-coding(lnc) isoforms of known genes 3085 47.74716 8