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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs

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Transcript id Chrom Gene Location Classification Length GC Content(%) Exon Number
Osa01LNT0045300.1 1 Osa01LNG0045300 35756464-35758719 long non-coding(lnc) isoforms of known genes 1026 51.36452 8
Osa01LNT0045400.1 1 Osa01LNG0045400 35839404-35839614 intergenetic lncRNA (lincRNA) 211 36.49289 1
Osa01LNT0004400.1 1 Osa01LNG0004400 3591827-3596094 long non-coding(lnc) isoforms of known genes 3060 49.24837 2
Osa01LNT0045500.1 1 Osa01LNG0045500 35933767-35934589 intergenetic lncRNA (lincRNA) 823 34.02187 1
Osa01LNT0045700.1 1 Osa01LNG0045700 36017376-36020799 long non-coding(lnc) isoforms of known genes 2183 38.79982 3
Osa01LNT0045600.1 1 Osa01LNG0045600 36083073-36085695 long non-coding(lnc) isoforms of known genes 631 50.07924 4
Osa01LNT0045800.1 1 Osa01LNG0045800 36105408-36110746 long non-coding(lnc) isoforms of known genes 2127 45.41608 10
Osa01LNT0461700.1 1 Osa01LNG0461700 36121057-36121283 intergenetic lncRNA (lincRNA) 227 26.87225 1
Osa01LNT0045900.2 1 Osa01LNG0045900 36138757-36146318 long non-coding(lnc) isoforms of known genes 3036 45.5863 14
Osa01LNT0045900.1 1 Osa01LNG0045900 36138757-36146318 long non-coding(lnc) isoforms of known genes 3033 45.59842 14
Osa01LNT0046000.1 1 Osa01LNG0046000 36248627-36249231 sense lncRNA 532 61.2782 2
Osa01LNT0046100.1 1 Osa01LNG0046100 36325404-36336607 long non-coding(lnc) isoforms of known genes 7593 44.64638 22
Osa01LNT0046100.2 1 Osa01LNG0046100 36325404-36336607 long non-coding(lnc) isoforms of known genes 2780 48.1295 21
Osa01LNT0046200.1 1 Osa01LNG0046200 36385616-36389449 long non-coding(lnc) isoforms of known genes 1967 41.53533 7
Osa01LNT0046200.2 1 Osa01LNG0046200 36385616-36389449 long non-coding(lnc) isoforms of known genes 2007 41.35526 7
Osa01LNT0046300.1 1 Osa01LNG0046300 36386047-36390354 long non-coding(lnc) isoforms of known genes 2593 47.89819 6
Osa01LNT0046400.1 1 Osa01LNG0046400 36445451-36448046 long non-coding(lnc) isoforms of known genes 2489 46.56489 2
Osa01LNT0046500.1 1 Osa01LNG0046500 36498458-36500636 intergenetic lncRNA (lincRNA) 570 43.85965 3
Osa01LNT0046600.1 1 Osa01LNG0046600 36534873-36537212 intergenetic lncRNA (lincRNA) 658 44.07295 2
Osa01LNT0046700.1 1 Osa01LNG0046700 36597719-36600524 long non-coding(lnc) isoforms of known genes 1178 56.96095 3
Osa01LNT0046800.1 1 Osa01LNG0046800 36643577-36647697 long non-coding(lnc) isoforms of known genes 2273 46.6344 8
Osa01LNT0046900.1 1 Osa01LNG0046900 36718089-36723110 long non-coding(lnc) isoforms of known genes 1544 52.84974 4
Osa01LNT0047000.1 1 Osa01LNG0047000 36736127-36737198 long non-coding(lnc) isoforms of known genes 739 46.27876 3
Osa01LNT0004500.1 1 Osa01LNG0004500 3696155-3699718 long non-coding(lnc) isoforms of known genes 1586 48.0454 10
Osa01LNT0047200.2 1 Osa01LNG0047200 37023827-37031493 long non-coding(lnc) isoforms of known genes 2792 48.81805 16
Osa01LNT0047200.1 1 Osa01LNG0047200 37023827-37031493 long non-coding(lnc) isoforms of known genes 2678 47.57282 16
Osa01LNT0047100.1 1 Osa01LNG0047100 37039556-37043202 long non-coding(lnc) isoforms of known genes 2210 45.11312 9
Osa01LNT0004600.1 1 Osa01LNG0004600 3705424-3708989 long non-coding(lnc) isoforms of known genes 1634 46.20563 13
Osa01LNT0047300.1 1 Osa01LNG0047300 37080268-37083368 long non-coding(lnc) isoforms of known genes 1169 43.28486 10
Osa01LNT0004800.1 1 Osa01LNG0004800 3713740-3718631 long non-coding(lnc) isoforms of known genes 2710 49.5941 14
Osa01LNT0047400.1 1 Osa01LNG0047400 37190475-37197744 long non-coding(lnc) isoforms of known genes 2273 46.23845 3
Osa01LNT0004700.1 1 Osa01LNG0004700 3720138-3723145 long non-coding(lnc) isoforms of known genes 1669 44.45776 4
Osa01LNT0047500.1 1 Osa01LNG0047500 37417036-37423391 sense lncRNA 3555 46.18847 15
Osa01LNT0047600.1 1 Osa01LNG0047600 37525983-37529093 long non-coding(lnc) isoforms of known genes 1785 49.13165 5
Osa01LNT0047700.2 1 Osa01LNG0047700 37556707-37560104 long non-coding(lnc) isoforms of known genes 2392 52.46656 3
Osa01LNT0047700.1 1 Osa01LNG0047700 37556707-37560104 long non-coding(lnc) isoforms of known genes 2549 50.80424 3
Osa01LNT0047800.1 1 Osa01LNG0047800 37584891-37588102 long non-coding(lnc) isoforms of known genes 1348 46.51335 7
Osa01LNT0047900.1 1 Osa01LNG0047900 37655471-37661226 long non-coding(lnc) isoforms of known genes 2772 48.01587 11
Osa01LNT0048100.1 1 Osa01LNG0048100 37667513-37678038 long non-coding(lnc) isoforms of known genes 2813 39.99289 22
Osa01LNT0048000.1 1 Osa01LNG0048000 37688093-37689341 long non-coding(lnc) isoforms of known genes 716 49.02235 4
Osa01LNT0048200.1 1 Osa01LNG0048200 37898963-37906732 long non-coding(lnc) isoforms of known genes 2872 50.27855 12
Osa01LNT0048300.1 1 Osa01LNG0048300 37914774-37918916 long non-coding(lnc) isoforms of known genes 1934 50.62048 5
Osa01LNT0048400.1 1 Osa01LNG0048400 38055662-38058030 intergenetic lncRNA (lincRNA) 1061 52.7804 4
Osa01LNT0461900.1 1 Osa01LNG0461900 38125864-38126137 intergenetic lncRNA (lincRNA) 274 24.08759 1
Osa01LNT0461800.1 1 Osa01LNG0461800 38125864-38126137 intergenetic lncRNA (lincRNA) 274 24.08759 1
Osa01LNT0048500.1 1 Osa01LNG0048500 38157319-38159769 long non-coding(lnc) isoforms of known genes 1725 50.49275 6
Osa01LNT0004900.1 1 Osa01LNG0004900 3827072-3830326 long non-coding(lnc) isoforms of known genes 1139 42.8446 7
Osa01LNT0048600.1 1 Osa01LNG0048600 38275062-38279030 long non-coding(lnc) isoforms of known genes 1496 53.40909 5
Osa01LNT0048700.1 1 Osa01LNG0048700 38282607-38287185 sense lncRNA 2646 51.70068 9
Osa01LNT0048800.1 1 Osa01LNG0048800 38431286-38433698 sense lncRNA 1318 59.78756 2