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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs

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Transcript id Chrom Gene Location Classification Length GC Content(%) Exon Number
Osa06LNT0335400.1 6 Osa06LNG0335400 6823036-6832896 long non-coding(lnc) isoforms of known genes 3880 47.80928 13
Osa06LNT0335500.1 6 Osa06LNG0335500 6906933-6908001 long non-coding(lnc) isoforms of known genes 947 47.51848 2
Osa06LNT0335600.1 6 Osa06LNG0335600 7005888-7008330 long non-coding(lnc) isoforms of known genes 1544 62.24093 3
Osa06LNT0335800.1 6 Osa06LNG0335800 7078859-7082232 long non-coding(lnc) isoforms of known genes 1330 47.66917 8
Osa06LNT0335700.1 6 Osa06LNG0335700 7086668-7088509 sense lncRNA 296 49.66216 2
Osa06LNT0335900.1 6 Osa06LNG0335900 7120876-7122798 sense lncRNA 919 43.30794 7
Osa06LNT0336000.1 6 Osa06LNG0336000 7128403-7133562 long non-coding(lnc) isoforms of known genes 2859 43.19692 12
Osa06LNT0336100.1 6 Osa06LNG0336100 7148668-7155330 long non-coding(lnc) isoforms of known genes 2171 46.70659 17
Osa06LNT0336200.1 6 Osa06LNG0336200 7160043-7164695 long non-coding(lnc) isoforms of known genes 2297 50.76186 12
Osa06LNT0336300.1 6 Osa06LNG0336300 7169239-7173005 long non-coding(lnc) isoforms of known genes 2287 49.71578 5
Osa06LNT0336400.1 6 Osa06LNG0336400 7287849-7290591 long non-coding(lnc) isoforms of known genes 1084 52.95203 2
Osa06LNT0498200.1 6 Osa06LNG0498200 7387215-7387488 intergenetic lncRNA (lincRNA) 274 26.27737 1
Osa06LNT0498300.1 6 Osa06LNG0498300 7387215-7387488 intergenetic lncRNA (lincRNA) 274 26.27737 1
Osa06LNT0336500.1 6 Osa06LNG0336500 7406049-7408609 long non-coding(lnc) isoforms of known genes 1952 37.80738 3
Osa06LNT0498400.1 6 Osa06LNG0498400 7451886-7452155 intergenetic lncRNA (lincRNA) 270 24.07407 1
Osa06LNT0498500.1 6 Osa06LNG0498500 7451886-7452155 intergenetic lncRNA (lincRNA) 270 24.07407 1
Osa06LNT0498600.1 6 Osa06LNG0498600 7452524-7452791 intergenetic lncRNA (lincRNA) 268 38.43284 1
Osa06LNT0336600.1 6 Osa06LNG0336600 7497904-7500603 long non-coding(lnc) isoforms of known genes 1373 53.75091 9
Osa06LNT0336700.1 6 Osa06LNG0336700 7563895-7570729 sense lncRNA 4114 45.47885 5
Osa06LNT0336800.1 6 Osa06LNG0336800 7765020-7769421 sense lncRNA 2655 44.97175 6
Osa06LNT0324400.1 6 Osa06LNG0324400 783550-783946 intergenetic lncRNA (lincRNA) 397 61.71285 1
Osa06LNT0336900.1 6 Osa06LNG0336900 7841699-7844795 long non-coding(lnc) isoforms of known genes 1954 45.49642 2
Osa06LNT0337000.1 6 Osa06LNG0337000 7849659-7851484 long non-coding(lnc) isoforms of known genes 1444 41.27424 5
Osa06LNT0498800.1 6 Osa06LNG0498800 8018484-8018769 intergenetic lncRNA (lincRNA) 286 24.47552 1
Osa06LNT0498700.1 6 Osa06LNG0498700 8018484-8018769 intergenetic lncRNA (lincRNA) 286 24.47552 1
Osa06LNT0498900.1 6 Osa06LNG0498900 8018836-8019078 intergenetic lncRNA (lincRNA) 243 25.10288 1
Osa06LNT0337100.1 6 Osa06LNG0337100 8030009-8035424 intergenetic lncRNA (lincRNA) 3286 49.54352 4
Osa06LNT0337100.2 6 Osa06LNG0337100 8030009-8035424 intergenetic lncRNA (lincRNA) 2611 53.581 6
Osa06LNT0324600.1 6 Osa06LNG0324600 811074-816533 long non-coding(lnc) isoforms of known genes 2106 47.10351 15
Osa06LNT0337200.1 6 Osa06LNG0337200 8129580-8134434 long non-coding(lnc) isoforms of known genes 1725 45.56522 6
Osa06LNT0499000.1 6 Osa06LNG0499000 8169348-8169571 intergenetic lncRNA (lincRNA) 224 52.67857 1
Osa06LNT0337300.1 6 Osa06LNG0337300 8194555-8198058 long non-coding(lnc) isoforms of known genes 667 51.72414 4
Osa06LNT0324500.1 6 Osa06LNG0324500 829102-830809 long non-coding(lnc) isoforms of known genes 823 58.93074 3
Osa06LNT0337400.1 6 Osa06LNG0337400 8317764-8324878 long non-coding(lnc) isoforms of known genes 4429 42.47008 10
Osa06LNT0337500.1 6 Osa06LNG0337500 8324988-8326089 intergenetic lncRNA (lincRNA) 1015 57.04433 2
Osa06LNT0337600.1 6 Osa06LNG0337600 8372433-8376921 sense lncRNA 1553 60.91436 2
Osa06LNT0324700.1 6 Osa06LNG0324700 841382-844109 long non-coding(lnc) isoforms of known genes 1555 46.04502 2
Osa06LNT0324800.1 6 Osa06LNG0324800 847248-849315 intergenetic lncRNA (lincRNA) 642 40.96573 3
Osa06LNT0499100.1 6 Osa06LNG0499100 8525498-8525739 intergenetic lncRNA (lincRNA) 242 48.34711 1
Osa06LNT0499200.1 6 Osa06LNG0499200 8573115-8573358 intergenetic lncRNA (lincRNA) 244 24.59016 1
Osa06LNT0499300.1 6 Osa06LNG0499300 8573115-8573358 intergenetic lncRNA (lincRNA) 244 24.59016 1
Osa06LNT0499500.1 6 Osa06LNG0499500 8573425-8573699 intergenetic lncRNA (lincRNA) 275 26.18182 1
Osa06LNT0499400.1 6 Osa06LNG0499400 8573425-8573699 intergenetic lncRNA (lincRNA) 275 26.18182 1
Osa06LNT0499600.1 6 Osa06LNG0499600 8600706-8600918 intergenetic lncRNA (lincRNA) 213 37.55869 1
Osa06LNT0324900.1 6 Osa06LNG0324900 864345-866959 long non-coding(lnc) isoforms of known genes 1732 49.48037 7
Osa06LNT0337700.1 6 Osa06LNG0337700 8753354-8757513 long non-coding(lnc) isoforms of known genes 1580 48.41772 13
Osa06LNT0337800.2 6 Osa06LNG0337800 8827098-8832586 Antisense lncRNA 5367 45.22079 2
Osa06LNT0337800.3 6 Osa06LNG0337800 8827098-8832586 Antisense lncRNA 286 53.4965 2
Osa06LNT0337800.1 6 Osa06LNG0337800 8827098-8832586 Antisense lncRNA 1268 51.41956 2
Osa06LNT0337900.1 6 Osa06LNG0337900 8837359-8837561 intronic lncRNA 203 40.8867 1