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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs

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Transcript id Chrom Gene Location Classification Length GC Content(%) Exon Number
Osa07LNT0372900.1 7 Osa07LNG0372900 8078976-8082653 long non-coding(lnc) isoforms of known genes 1891 46.27181 7
Osa07LNT0373000.1 7 Osa07LNG0373000 8264833-8278955 long non-coding(lnc) isoforms of known genes 1811 46.76974 12
Osa07LNT0373100.1 7 Osa07LNG0373100 8321651-8325048 long non-coding(lnc) isoforms of known genes 2792 48.88968 4
Osa07LNT0373200.1 7 Osa07LNG0373200 8334409-8337966 long non-coding(lnc) isoforms of known genes 1697 61.75604 5
Osa07LNT0373300.1 7 Osa07LNG0373300 8679295-8683072 intergenetic lncRNA (lincRNA) 1097 49.95442 4
Osa07LNT0373400.1 7 Osa07LNG0373400 8702233-8706909 long non-coding(lnc) isoforms of known genes 2161 54.37298 5
Osa07LNT0373500.1 7 Osa07LNG0373500 8812234-8815314 long non-coding(lnc) isoforms of known genes 936 50.32051 8
Osa07LNT0373600.2 7 Osa07LNG0373600 8930095-8943847 long non-coding(lnc) isoforms of known genes 4524 42.15296 25
Osa07LNT0373600.1 7 Osa07LNG0373600 8930095-8943847 long non-coding(lnc) isoforms of known genes 4609 42.15665 25
Osa07LNT0373700.1 7 Osa07LNG0373700 8993721-8997251 long non-coding(lnc) isoforms of known genes 1892 50.05285 8
Osa07LNT0373800.1 7 Osa07LNG0373800 9071611-9077790 long non-coding(lnc) isoforms of known genes 4886 41.95661 5
Osa07LNT0363800.1 7 Osa07LNG0363800 925097-931502 sense lncRNA 6134 45.04402 3
Osa07LNT0373900.1 7 Osa07LNG0373900 9460566-9473894 long non-coding(lnc) isoforms of known genes 3333 45.69457 23
Osa08LNT0550400.1 8 Osa08LNG0550400 10035211-10035484 intergenetic lncRNA (lincRNA) 274 29.56204 1
Osa08LNT0550300.1 8 Osa08LNG0550300 10035211-10035484 intergenetic lncRNA (lincRNA) 274 29.56204 1
Osa08LNT0546100.1 8 Osa08LNG0546100 100419-100654 intergenetic lncRNA (lincRNA) 236 23.30508 1
Osa08LNT0550600.1 8 Osa08LNG0550600 10055805-10056079 intergenetic lncRNA (lincRNA) 275 25.09091 1
Osa08LNT0550500.1 8 Osa08LNG0550500 10055805-10056079 intergenetic lncRNA (lincRNA) 275 25.09091 1
Osa08LNT0406400.1 8 Osa08LNG0406400 10084785-10088210 intergenetic lncRNA (lincRNA) 1949 46.38276 4
Osa08LNT0406400.2 8 Osa08LNG0406400 10084785-10088210 intergenetic lncRNA (lincRNA) 2325 44.04301 3
Osa08LNT0550700.1 8 Osa08LNG0550700 10088685-10088900 intergenetic lncRNA (lincRNA) 216 23.61111 1
Osa08LNT0406600.1 8 Osa08LNG0406600 10269099-10270739 sense lncRNA 1153 52.81873 2
Osa08LNT0406500.1 8 Osa08LNG0406500 10296961-10300697 sense lncRNA 1153 52.732 2
Osa08LNT0406700.2 8 Osa08LNG0406700 10361690-10364219 long non-coding(lnc) isoforms of known genes 1083 47.18375 4
Osa08LNT0406700.1 8 Osa08LNG0406700 10361690-10364219 long non-coding(lnc) isoforms of known genes 1164 46.90722 4
Osa08LNT0550800.1 8 Osa08LNG0550800 10547747-10548020 intergenetic lncRNA (lincRNA) 274 31.38686 1
Osa08LNT0550900.1 8 Osa08LNG0550900 10547747-10548020 intergenetic lncRNA (lincRNA) 274 31.38686 1
Osa08LNT0406800.1 8 Osa08LNG0406800 10600809-10601262 intergenetic lncRNA (lincRNA) 454 60.13216 1
Osa08LNT0406900.2 8 Osa08LNG0406900 10621769-10625430 long non-coding(lnc) isoforms of known genes 2337 45.99914 5
Osa08LNT0406900.1 8 Osa08LNG0406900 10621769-10625430 long non-coding(lnc) isoforms of known genes 2556 45.22692 5
Osa08LNT0407000.1 8 Osa08LNG0407000 10633640-10639603 long non-coding(lnc) isoforms of known genes 2109 50.3082 4
Osa08LNT0407000.2 8 Osa08LNG0407000 10633640-10639603 long non-coding(lnc) isoforms of known genes 2080 50.04808 4
Osa08LNT0551000.1 8 Osa08LNG0551000 10890115-10890389 intergenetic lncRNA (lincRNA) 275 26.90909 1
Osa08LNT0551100.1 8 Osa08LNG0551100 10890115-10890390 intergenetic lncRNA (lincRNA) 276 26.81159 1
Osa08LNT0407100.1 8 Osa08LNG0407100 11055447-11062439 long non-coding(lnc) isoforms of known genes 1955 44.34783 6
Osa08LNT0407200.2 8 Osa08LNG0407200 11074045-11077072 long non-coding(lnc) isoforms of known genes 2131 40.77898 3
Osa08LNT0407200.1 8 Osa08LNG0407200 11074045-11077072 long non-coding(lnc) isoforms of known genes 2136 40.82397 3
Osa08LNT0396300.1 8 Osa08LNG0396300 1117872-1119151 Antisense lncRNA 236 47.0339 2
Osa08LNT0396400.1 8 Osa08LNG0396400 1121772-1126426 long non-coding(lnc) isoforms of known genes 2902 48.86285 3
Osa08LNT0407300.1 8 Osa08LNG0407300 11271264-11272444 intergenetic lncRNA (lincRNA) 1181 63.16681 1
Osa08LNT0407400.1 8 Osa08LNG0407400 11274716-11279209 long non-coding(lnc) isoforms of known genes 2207 48.43679 10
Osa08LNT0551300.1 8 Osa08LNG0551300 11437347-11437570 intergenetic lncRNA (lincRNA) 224 29.01786 1
Osa08LNT0551200.1 8 Osa08LNG0551200 11437347-11437570 intergenetic lncRNA (lincRNA) 224 29.01786 1
Osa08LNT0407500.1 8 Osa08LNG0407500 11438020-11440989 long non-coding(lnc) isoforms of known genes 2780 46.00719 3
Osa08LNT0407600.1 8 Osa08LNG0407600 11463136-11468530 long non-coding(lnc) isoforms of known genes 2316 51.59758 6
Osa08LNT0407700.1 8 Osa08LNG0407700 11548031-11554951 long non-coding(lnc) isoforms of known genes 3994 46.61993 5
Osa08LNT0407700.2 8 Osa08LNG0407700 11548031-11554951 long non-coding(lnc) isoforms of known genes 3608 47.36696 5
Osa08LNT0407800.1 8 Osa08LNG0407800 11558502-11563711 long non-coding(lnc) isoforms of known genes 2824 42.70538 11
Osa08LNT0551400.1 8 Osa08LNG0551400 11610472-11610747 intergenetic lncRNA (lincRNA) 276 25.36232 1
Osa08LNT0551600.1 8 Osa08LNG0551600 11611549-11611801 intergenetic lncRNA (lincRNA) 253 26.08696 1