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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs

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Transcript id Chrom Gene Location Classification Length GC Content(%) Exon Number
Osa08LNT0412500.1 8 Osa08LNG0412500 18551080-18551688 intergenetic lncRNA (lincRNA) 609 56.81445 1
Osa08LNT0412800.1 8 Osa08LNG0412800 18605035-18605467 intergenetic lncRNA (lincRNA) 433 51.50115 1
Osa08LNT0412700.1 8 Osa08LNG0412700 18652234-18653256 intergenetic lncRNA (lincRNA) 1023 56.30499 1
Osa08LNT0554600.1 8 Osa08LNG0554600 18677851-18678079 intronic lncRNA 229 25.32751 1
Osa08LNT0554700.1 8 Osa08LNG0554700 18677854-18678076 intronic lncRNA 223 25.56054 1
Osa08LNT0412900.1 8 Osa08LNG0412900 18770303-18771442 sense lncRNA 578 45.32872 2
Osa08LNT0413000.1 8 Osa08LNG0413000 18960129-18966328 long non-coding(lnc) isoforms of known genes 3202 47.18926 17
Osa08LNT0395200.1 8 Osa08LNG0395200 190890-194937 long non-coding(lnc) isoforms of known genes 2835 41.55203 4
Osa08LNT0397200.1 8 Osa08LNG0397200 1918183-1920105 intergenetic lncRNA (lincRNA) 449 47.21604 3
Osa08LNT0397300.1 8 Osa08LNG0397300 1922039-1923667 long non-coding(lnc) isoforms of known genes 653 44.56355 3
Osa08LNT0554800.1 8 Osa08LNG0554800 19318534-19318740 intergenetic lncRNA (lincRNA) 207 23.18841 1
Osa08LNT0555000.1 8 Osa08LNG0555000 19409951-19410224 intergenetic lncRNA (lincRNA) 274 31.38686 1
Osa08LNT0554900.1 8 Osa08LNG0554900 19409951-19410224 intergenetic lncRNA (lincRNA) 274 31.38686 1
Osa08LNT0555200.1 8 Osa08LNG0555200 19514317-19514591 intergenetic lncRNA (lincRNA) 275 27.27273 1
Osa08LNT0555100.1 8 Osa08LNG0555100 19514317-19514591 intergenetic lncRNA (lincRNA) 275 27.27273 1
Osa08LNT0413100.1 8 Osa08LNG0413100 19672758-19676618 long non-coding(lnc) isoforms of known genes 1929 47.79679 8
Osa08LNT0413200.1 8 Osa08LNG0413200 19703238-19707972 long non-coding(lnc) isoforms of known genes 1978 47.21941 4
Osa08LNT0413300.1 8 Osa08LNG0413300 19775406-19779975 long non-coding(lnc) isoforms of known genes 2616 59.17431 4
Osa08LNT0413400.4 8 Osa08LNG0413400 19912856-19918776 long non-coding(lnc) isoforms of known genes 3107 48.79305 6
Osa08LNT0413400.1 8 Osa08LNG0413400 19912856-19918776 long non-coding(lnc) isoforms of known genes 3755 47.50999 8
Osa08LNT0413400.2 8 Osa08LNG0413400 19912856-19918776 long non-coding(lnc) isoforms of known genes 4066 46.99951 6
Osa08LNT0413400.3 8 Osa08LNG0413400 19912856-19918776 long non-coding(lnc) isoforms of known genes 3688 47.20716 8
Osa08LNT0555300.1 8 Osa08LNG0555300 19925465-19925709 intergenetic lncRNA (lincRNA) 245 26.12245 1
Osa08LNT0555400.1 8 Osa08LNG0555400 19925465-19925709 intergenetic lncRNA (lincRNA) 245 26.12245 1
Osa08LNT0413500.1 8 Osa08LNG0413500 19950692-19952388 long non-coding(lnc) isoforms of known genes 1607 58.05849 2
Osa08LNT0397400.1 8 Osa08LNG0397400 2000026-2005612 long non-coding(lnc) isoforms of known genes 2467 45.92623 16
Osa08LNT0555500.1 8 Osa08LNG0555500 20028600-20028816 intergenetic lncRNA (lincRNA) 217 40.09217 1
Osa08LNT0413600.1 8 Osa08LNG0413600 20085782-20086597 intergenetic lncRNA (lincRNA) 816 38.35784 1
Osa08LNT0397500.1 8 Osa08LNG0397500 2013220-2015461 long non-coding(lnc) isoforms of known genes 865 54.21965 5
Osa08LNT0395300.1 8 Osa08LNG0395300 201467-203842 long non-coding(lnc) isoforms of known genes 1271 52.32101 4
Osa08LNT0413700.1 8 Osa08LNG0413700 20245563-20246821 Antisense lncRNA 261 61.30268 3
Osa08LNT0413800.1 8 Osa08LNG0413800 20248618-20254348 long non-coding(lnc) isoforms of known genes 1394 49.78479 6
Osa08LNT0413900.1 8 Osa08LNG0413900 20263877-20264489 intergenetic lncRNA (lincRNA) 613 65.57912 1
Osa08LNT0555700.1 8 Osa08LNG0555700 20265406-20265680 intergenetic lncRNA (lincRNA) 275 27.63636 1
Osa08LNT0555600.1 8 Osa08LNG0555600 20265406-20265680 intergenetic lncRNA (lincRNA) 275 27.63636 1
Osa08LNT0555800.1 8 Osa08LNG0555800 20307733-20307977 intergenetic lncRNA (lincRNA) 245 27.34694 1
Osa08LNT0555900.1 8 Osa08LNG0555900 20308044-20308318 intergenetic lncRNA (lincRNA) 275 26.54545 1
Osa08LNT0556000.1 8 Osa08LNG0556000 20343264-20343476 intergenetic lncRNA (lincRNA) 213 49.76526 1
Osa08LNT0414000.1 8 Osa08LNG0414000 20359562-20366449 long non-coding(lnc) isoforms of known genes 2098 48.61773 10
Osa08LNT0556100.1 8 Osa08LNG0556100 20399629-20399865 intergenetic lncRNA (lincRNA) 237 64.55696 1
Osa08LNT0414200.1 8 Osa08LNG0414200 20578999-20583484 long non-coding(lnc) isoforms of known genes 2341 46.13413 7
Osa08LNT0414100.1 8 Osa08LNG0414100 20615994-20616660 intergenetic lncRNA (lincRNA) 667 34.03298 1
Osa08LNT0414300.1 8 Osa08LNG0414300 20698551-20702571 Antisense lncRNA 593 47.0489 2
Osa08LNT0414400.2 8 Osa08LNG0414400 20802535-20805463 long non-coding(lnc) isoforms of known genes 1330 45.18797 8
Osa08LNT0414400.1 8 Osa08LNG0414400 20802535-20805463 long non-coding(lnc) isoforms of known genes 1346 45.02229 8
Osa08LNT0414500.1 8 Osa08LNG0414500 20816627-20820444 long non-coding(lnc) isoforms of known genes 1175 49.78723 7
Osa08LNT0414600.1 8 Osa08LNG0414600 20821174-20862257 long non-coding(lnc) isoforms of known genes 1845 61.08401 7
Osa08LNT0414600.2 8 Osa08LNG0414600 20821174-20862257 long non-coding(lnc) isoforms of known genes 1884 53.45011 11
Osa08LNT0414700.1 8 Osa08LNG0414700 21000076-21003935 long non-coding(lnc) isoforms of known genes 1185 47.08861 12
Osa08LNT0414800.1 8 Osa08LNG0414800 21019031-21023588 long non-coding(lnc) isoforms of known genes 4105 40.87698 3