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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs

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Transcript id Chrom Gene Location Classification Length GC Content(%) Exon Number
Osa08LNT0417400.1 8 Osa08LNG0417400 23551865-23554169 long non-coding(lnc) isoforms of known genes 1067 48.26617 3
Osa08LNT0417500.1 8 Osa08LNG0417500 23576748-23579088 long non-coding(lnc) isoforms of known genes 1291 47.48257 6
Osa08LNT0557200.1 8 Osa08LNG0557200 23615957-23616201 intergenetic lncRNA (lincRNA) 245 24.89796 1
Osa08LNT0557300.1 8 Osa08LNG0557300 23616268-23616542 intergenetic lncRNA (lincRNA) 275 26.18182 1
Osa08LNT0557400.1 8 Osa08LNG0557400 23616268-23616542 intergenetic lncRNA (lincRNA) 275 26.18182 1
Osa08LNT0417700.1 8 Osa08LNG0417700 23623292-23628557 long non-coding(lnc) isoforms of known genes 2650 46.90566 13
Osa08LNT0417700.2 8 Osa08LNG0417700 23623292-23628557 long non-coding(lnc) isoforms of known genes 2295 49.28105 13
Osa08LNT0417600.1 8 Osa08LNG0417600 23679056-23681530 intergenetic lncRNA (lincRNA) 717 50.76709 3
Osa08LNT0417800.1 8 Osa08LNG0417800 23802955-23805451 long non-coding(lnc) isoforms of known genes 2426 54.86397 2
Osa08LNT0417900.1 8 Osa08LNG0417900 23807900-23810909 long non-coding(lnc) isoforms of known genes 949 51.73867 6
Osa08LNT0417900.2 8 Osa08LNG0417900 23807900-23810909 long non-coding(lnc) isoforms of known genes 942 51.80467 6
Osa08LNT0418000.1 8 Osa08LNG0418000 23826103-23827217 intergenetic lncRNA (lincRNA) 473 51.79704 2
Osa08LNT0418100.2 8 Osa08LNG0418100 23850439-23852872 long non-coding(lnc) isoforms of known genes 773 48.25356 4
Osa08LNT0418100.1 8 Osa08LNG0418100 23850439-23852872 long non-coding(lnc) isoforms of known genes 767 48.37027 4
Osa08LNT0418200.1 8 Osa08LNG0418200 23883849-23886487 long non-coding(lnc) isoforms of known genes 879 46.98521 6
Osa08LNT0418300.1 8 Osa08LNG0418300 23926958-23934308 long non-coding(lnc) isoforms of known genes 2713 45.30041 15
Osa08LNT0418400.1 8 Osa08LNG0418400 24031143-24031375 intergenetic lncRNA (lincRNA) 233 66.95279 1
Osa08LNT0394800.1 8 Osa08LNG0394800 24071-25909 intergenetic lncRNA (lincRNA) 1632 41.42157 3
Osa08LNT0418500.1 8 Osa08LNG0418500 24298120-24300110 intergenetic lncRNA (lincRNA) 1236 46.76375 2
Osa08LNT0418600.1 8 Osa08LNG0418600 24397033-24401324 long non-coding(lnc) isoforms of known genes 2975 41.0084 8
Osa08LNT0418700.1 8 Osa08LNG0418700 24398736-24399156 Antisense lncRNA 315 42.22222 2
Osa08LNT0418800.1 8 Osa08LNG0418800 24581457-24583695 long non-coding(lnc) isoforms of known genes 1581 57.55851 2
Osa08LNT0418900.1 8 Osa08LNG0418900 24593305-24597525 long non-coding(lnc) isoforms of known genes 3790 50.5277 4
Osa08LNT0419000.1 8 Osa08LNG0419000 24645932-24649832 long non-coding(lnc) isoforms of known genes 3379 45.22048 4
Osa08LNT0419100.1 8 Osa08LNG0419100 24795764-24796388 intergenetic lncRNA (lincRNA) 625 47.68 1
Osa08LNT0419200.1 8 Osa08LNG0419200 24807833-24812084 intergenetic lncRNA (lincRNA) 485 49.27835 3
Osa08LNT0419300.1 8 Osa08LNG0419300 24842097-24844490 intergenetic lncRNA (lincRNA) 1277 50.50901 5
Osa08LNT0419400.1 8 Osa08LNG0419400 24929699-24934781 long non-coding(lnc) isoforms of known genes 1217 48.80855 12
Osa08LNT0419500.1 8 Osa08LNG0419500 24993082-24994517 sense lncRNA 570 52.10526 2
Osa08LNT0419600.1 8 Osa08LNG0419600 25053426-25056287 sense lncRNA 556 48.20144 2
Osa08LNT0419700.2 8 Osa08LNG0419700 25064047-25066788 long non-coding(lnc) isoforms of known genes 1298 48.53621 7
Osa08LNT0419700.1 8 Osa08LNG0419700 25064047-25066788 long non-coding(lnc) isoforms of known genes 1293 48.56922 7
Osa08LNT0398200.1 8 Osa08LNG0398200 2507299-2514517 long non-coding(lnc) isoforms of known genes 3104 44.23325 10
Osa08LNT0419800.1 8 Osa08LNG0419800 25196760-25202873 long non-coding(lnc) isoforms of known genes 1996 50.4008 7
Osa08LNT0419800.3 8 Osa08LNG0419800 25196760-25202873 long non-coding(lnc) isoforms of known genes 3050 45.21311 5
Osa08LNT0419800.2 8 Osa08LNG0419800 25196760-25202873 long non-coding(lnc) isoforms of known genes 3353 44.0501 6
Osa08LNT0419900.1 8 Osa08LNG0419900 25301706-25302366 intergenetic lncRNA (lincRNA) 661 50.5295 1
Osa08LNT0420000.1 8 Osa08LNG0420000 25377676-25381270 long non-coding(lnc) isoforms of known genes 2804 52.46077 4
Osa08LNT0420100.1 8 Osa08LNG0420100 25388405-25392367 long non-coding(lnc) isoforms of known genes 1752 53.53881 5
Osa08LNT0420200.1 8 Osa08LNG0420200 25396243-25397205 intronic lncRNA 963 34.57944 1
Osa08LNT0557500.1 8 Osa08LNG0557500 25560520-25560764 intergenetic lncRNA (lincRNA) 245 27.7551 1
Osa08LNT0557600.1 8 Osa08LNG0557600 25560520-25560764 intergenetic lncRNA (lincRNA) 245 27.7551 1
Osa08LNT0420400.1 8 Osa08LNG0420400 25652873-25663757 long non-coding(lnc) isoforms of known genes 3913 44.41605 35
Osa08LNT0420300.1 8 Osa08LNG0420300 25683618-25686522 long non-coding(lnc) isoforms of known genes 1847 49.1608 8
Osa08LNT0420500.1 8 Osa08LNG0420500 25687727-25690627 long non-coding(lnc) isoforms of known genes 975 50.25641 9
Osa08LNT0420600.1 8 Osa08LNG0420600 25719540-25721973 sense lncRNA 2306 50.39029 2
Osa08LNT0398000.1 8 Osa08LNG0398000 2572005-2573258 sense lncRNA 332 50.90361 2
Osa08LNT0398300.1 8 Osa08LNG0398300 2575784-2584593 long non-coding(lnc) isoforms of known genes 2851 48.47422 12
Osa08LNT0398300.3 8 Osa08LNG0398300 2575784-2584593 long non-coding(lnc) isoforms of known genes 2108 50.42694 11
Osa08LNT0398300.2 8 Osa08LNG0398300 2575784-2584593 long non-coding(lnc) isoforms of known genes 1640 50.4878 10