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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs

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Transcript id Chrom Gene Location Classification Length GC Content(%) Exon Number
Osa03LNT0225300.1 3 Osa03LNG0225300 24426730-24436012 long non-coding(lnc) isoforms of known genes 5613 42.91823 6
Osa03LNT0196500.1 3 Osa03LNG0196500 2450313-2455324 long non-coding(lnc) isoforms of known genes 3481 42.68888 7
Osa03LNT0196500.2 3 Osa03LNG0196500 2450313-2455324 long non-coding(lnc) isoforms of known genes 3406 42.92425 8
Osa03LNT0196600.4 3 Osa03LNG0196600 2459016-2462154 sense lncRNA 1432 48.25419 3
Osa03LNT0196600.3 3 Osa03LNG0196600 2459016-2462154 sense lncRNA 2134 43.11153 3
Osa03LNT0196600.2 3 Osa03LNG0196600 2459016-2462154 sense lncRNA 2231 42.71627 2
Osa03LNT0196600.1 3 Osa03LNG0196600 2459016-2462154 sense lncRNA 2400 43.45833 2
Osa03LNT0225400.1 3 Osa03LNG0225400 24630180-24634746 long non-coding(lnc) isoforms of known genes 1624 50.61576 8
Osa03LNT0225500.1 3 Osa03LNG0225500 24701195-24706912 sense lncRNA 2863 48.3409 4
Osa03LNT0225600.1 3 Osa03LNG0225600 25005911-25006115 Antisense lncRNA 205 24.87805 1
Osa03LNT0225700.1 3 Osa03LNG0225700 25008341-25010369 long non-coding(lnc) isoforms of known genes 929 52.96017 3
Osa03LNT0225800.1 3 Osa03LNG0225800 25042427-25051552 long non-coding(lnc) isoforms of known genes 4111 52.49331 21
Osa03LNT0225900.1 3 Osa03LNG0225900 25062638-25066668 long non-coding(lnc) isoforms of known genes 2006 49.8006 8
Osa03LNT0226000.1 3 Osa03LNG0226000 25073911-25074163 intronic lncRNA 253 38.73518 1
Osa03LNT0469800.1 3 Osa03LNG0469800 25088705-25088948 intergenetic lncRNA (lincRNA) 244 25.0 1
Osa03LNT0469900.1 3 Osa03LNG0469900 25088705-25088948 intergenetic lncRNA (lincRNA) 244 25.0 1
Osa03LNT0470100.1 3 Osa03LNG0470100 25089015-25089290 intergenetic lncRNA (lincRNA) 276 24.63768 1
Osa03LNT0470000.1 3 Osa03LNG0470000 25089015-25089290 intergenetic lncRNA (lincRNA) 276 24.63768 1
Osa03LNT0470200.1 3 Osa03LNG0470200 25215923-25216166 intergenetic lncRNA (lincRNA) 244 24.59016 1
Osa03LNT0470300.1 3 Osa03LNG0470300 25216233-25216506 intergenetic lncRNA (lincRNA) 274 27.37226 1
Osa03LNT0470400.1 3 Osa03LNG0470400 25216233-25216506 intergenetic lncRNA (lincRNA) 274 27.37226 1
Osa03LNT0226100.1 3 Osa03LNG0226100 25248155-25248402 intergenetic lncRNA (lincRNA) 248 25.40323 1
Osa03LNT0226200.1 3 Osa03LNG0226200 25268199-25273008 long non-coding(lnc) isoforms of known genes 1659 44.24352 7
Osa03LNT0226300.1 3 Osa03LNG0226300 25279444-25286376 long non-coding(lnc) isoforms of known genes 1721 46.31028 13
Osa03LNT0470500.1 3 Osa03LNG0470500 25289592-25289856 intergenetic lncRNA (lincRNA) 265 26.79245 1