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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs

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Transcript id Chrom Gene Location Classification Length GC Content(%) Exon Number
Osa08LNT0424300.1 8 Osa08LNG0424300 28123306-28126252 long non-coding(lnc) isoforms of known genes 2122 51.50801 6
Osa08LNT0424300.2 8 Osa08LNG0424300 28123306-28126252 long non-coding(lnc) isoforms of known genes 2485 49.53722 6
Osa08LNT0398500.1 8 Osa08LNG0398500 2813235-2815972 intergenetic lncRNA (lincRNA) 1685 46.23145 5
Osa08LNT0424500.1 8 Osa08LNG0424500 28173373-28181759 long non-coding(lnc) isoforms of known genes 3278 43.59365 30
Osa08LNT0424500.2 8 Osa08LNG0424500 28173373-28181759 long non-coding(lnc) isoforms of known genes 3473 44.14051 33
Osa08LNT0424400.1 8 Osa08LNG0424400 28208778-28211676 long non-coding(lnc) isoforms of known genes 729 44.30727 4
Osa08LNT0424600.1 8 Osa08LNG0424600 28356138-28360999 long non-coding(lnc) isoforms of known genes 1290 60.54264 3
Osa08LNT0398600.1 8 Osa08LNG0398600 2909637-2912538 long non-coding(lnc) isoforms of known genes 1757 44.62151 5
Osa08LNT0398700.1 8 Osa08LNG0398700 3013807-3016330 long non-coding(lnc) isoforms of known genes 1693 46.95806 3
Osa08LNT0398800.1 8 Osa08LNG0398800 3022668-3025948 long non-coding(lnc) isoforms of known genes 1244 44.2926 8
Osa08LNT0398900.1 8 Osa08LNG0398900 3031282-3043433 long non-coding(lnc) isoforms of known genes 3857 40.73114 27
Osa08LNT0398900.2 8 Osa08LNG0398900 3031282-3043433 long non-coding(lnc) isoforms of known genes 3362 41.01725 27
Osa08LNT0399000.1 8 Osa08LNG0399000 3117825-3118313 intergenetic lncRNA (lincRNA) 489 46.42127 1
Osa08LNT0399100.1 8 Osa08LNG0399100 3224341-3233837 long non-coding(lnc) isoforms of known genes 5920 45.72635 14
Osa08LNT0399200.1 8 Osa08LNG0399200 3318571-3318924 intergenetic lncRNA (lincRNA) 354 59.03955 1
Osa08LNT0399300.1 8 Osa08LNG0399300 3382554-3387003 long non-coding(lnc) isoforms of known genes 3554 42.03714 3
Osa08LNT0399500.1 8 Osa08LNG0399500 3460798-3463758 long non-coding(lnc) isoforms of known genes 906 48.45475 6
Osa08LNT0399500.2 8 Osa08LNG0399500 3460798-3463758 long non-coding(lnc) isoforms of known genes 994 47.58551 7
Osa08LNT0399400.1 8 Osa08LNG0399400 3508751-3512202 long non-coding(lnc) isoforms of known genes 1575 60.57143 3
Osa08LNT0399600.1 8 Osa08LNG0399600 3514010-3518732 long non-coding(lnc) isoforms of known genes 4312 50.18553 4
Osa08LNT0395500.1 8 Osa08LNG0395500 361169-366553 long non-coding(lnc) isoforms of known genes 1863 43.42458 10
Osa08LNT0399700.1 8 Osa08LNG0399700 3832619-3834999 sense lncRNA 539 48.23748 2
Osa08LNT0399800.1 8 Osa08LNG0399800 3960688-3960922 intergenetic lncRNA (lincRNA) 235 24.25532 1
Osa08LNT0399900.1 8 Osa08LNG0399900 4175878-4178531 sense lncRNA 1140 52.36842 8
Osa08LNT0400000.1 8 Osa08LNG0400000 4211520-4212904 sense lncRNA 1307 67.48279 2
Osa08LNT0400100.2 8 Osa08LNG0400100 4406652-4417245 long non-coding(lnc) isoforms of known genes 4555 45.02744 10
Osa08LNT0400100.1 8 Osa08LNG0400100 4406652-4417245 long non-coding(lnc) isoforms of known genes 4587 45.04033 10
Osa08LNT0400200.1 8 Osa08LNG0400200 4523794-4538688 long non-coding(lnc) isoforms of known genes 6369 45.70576 22
Osa08LNT0400200.2 8 Osa08LNG0400200 4523794-4538688 long non-coding(lnc) isoforms of known genes 6297 45.83135 24
Osa08LNT0400300.1 8 Osa08LNG0400300 4544807-4546932 intergenetic lncRNA (lincRNA) 1771 40.71146 3
Osa08LNT0400400.2 8 Osa08LNG0400400 4566376-4570160 long non-coding(lnc) isoforms of known genes 1560 51.28205 10
Osa08LNT0400400.1 8 Osa08LNG0400400 4566376-4570160 long non-coding(lnc) isoforms of known genes 1643 51.36945 9
Osa08LNT0400500.1 8 Osa08LNG0400500 4645219-4648976 long non-coding(lnc) isoforms of known genes 1679 59.02323 7
Osa08LNT0546300.1 8 Osa08LNG0546300 4804197-4804471 intergenetic lncRNA (lincRNA) 275 24.72727 1
Osa08LNT0546400.1 8 Osa08LNG0546400 4804197-4804471 intergenetic lncRNA (lincRNA) 275 24.72727 1
Osa08LNT0400600.1 8 Osa08LNG0400600 4857639-4859164 intergenetic lncRNA (lincRNA) 1429 59.13226 2
Osa08LNT0400700.1 8 Osa08LNG0400700 4972402-4973777 long non-coding(lnc) isoforms of known genes 796 62.18593 5
Osa08LNT0546500.1 8 Osa08LNG0546500 5012547-5012821 intergenetic lncRNA (lincRNA) 275 24.72727 1
Osa08LNT0546600.1 8 Osa08LNG0546600 5012547-5012821 intergenetic lncRNA (lincRNA) 275 24.72727 1
Osa08LNT0400800.1 8 Osa08LNG0400800 5027574-5030095 intergenetic lncRNA (lincRNA) 599 39.89983 2
Osa08LNT0400900.1 8 Osa08LNG0400900 5118757-5128123 long non-coding(lnc) isoforms of known genes 3425 48.40876 8
Osa08LNT0395600.2 8 Osa08LNG0395600 513763-518274 long non-coding(lnc) isoforms of known genes 1420 46.26761 9
Osa08LNT0395600.1 8 Osa08LNG0395600 513763-518274 long non-coding(lnc) isoforms of known genes 1173 47.57033 8
Osa08LNT0401000.1 8 Osa08LNG0401000 5147424-5150332 long non-coding(lnc) isoforms of known genes 1601 51.59275 5
Osa08LNT0401200.1 8 Osa08LNG0401200 5267992-5273165 long non-coding(lnc) isoforms of known genes 1837 53.51116 8
Osa08LNT0401200.2 8 Osa08LNG0401200 5267992-5273165 long non-coding(lnc) isoforms of known genes 1753 53.90759 7
Osa08LNT0401200.3 8 Osa08LNG0401200 5267992-5273165 long non-coding(lnc) isoforms of known genes 3406 44.53905 7
Osa08LNT0401100.1 8 Osa08LNG0401100 5274221-5274572 intergenetic lncRNA (lincRNA) 352 27.55682 1
Osa08LNT0401300.1 8 Osa08LNG0401300 5378840-5383473 long non-coding(lnc) isoforms of known genes 1347 40.75724 8
Osa08LNT0401400.1 8 Osa08LNG0401400 5400904-5404494 long non-coding(lnc) isoforms of known genes 1527 48.39555 11