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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs

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Transcript id Chrom Gene Location Classification Length GC Content(%) Exon Number
Osa11LNT0095400.1 11 Osa11LNG0095400 11401367-11401616 Antisense lncRNA 250 27.6 1
Osa11LNT0095500.2 11 Osa11LNG0095500 11407302-11411295 long non-coding(lnc) isoforms of known genes 2387 53.41433 8
Osa11LNT0095500.1 11 Osa11LNG0095500 11407302-11411295 long non-coding(lnc) isoforms of known genes 2794 51.00215 6
Osa11LNT0536200.1 11 Osa11LNG0536200 11420869-11421076 intergenetic lncRNA (lincRNA) 208 43.75 1
Osa11LNT0095600.1 11 Osa11LNG0095600 11703417-11703754 intronic lncRNA 338 36.98225 1
Osa11LNT0095700.1 11 Osa11LNG0095700 11712800-11716306 long non-coding(lnc) isoforms of known genes 2442 45.3317 5
Osa11LNT0095700.2 11 Osa11LNG0095700 11712800-11716306 long non-coding(lnc) isoforms of known genes 1572 49.93639 6
Osa11LNT0082200.1 11 Osa11LNG0082200 117292-124378 long non-coding(lnc) isoforms of known genes 3271 46.2244 15
Osa11LNT0095800.1 11 Osa11LNG0095800 11736082-11739401 long non-coding(lnc) isoforms of known genes 1782 51.06622 7
Osa11LNT0095900.2 11 Osa11LNG0095900 11744815-11760956 long non-coding(lnc) isoforms of known genes 1114 51.3465 5
Osa11LNT0095900.1 11 Osa11LNG0095900 11744815-11760956 long non-coding(lnc) isoforms of known genes 933 51.66131 4
Osa11LNT0084300.1 11 Osa11LNG0084300 1180283-1182666 intergenetic lncRNA (lincRNA) 325 57.53846 2
Osa11LNT0082000.1 11 Osa11LNG0082000 1180-4230 long non-coding(lnc) isoforms of known genes 666 45.64565 5
Osa11LNT0084400.1 11 Osa11LNG0084400 1183841-1184342 intergenetic lncRNA (lincRNA) 502 46.21514 1
Osa11LNT0096000.1 11 Osa11LNG0096000 11871375-11879058 long non-coding(lnc) isoforms of known genes 2965 45.86847 8
Osa11LNT0096000.2 11 Osa11LNG0096000 11871375-11879058 long non-coding(lnc) isoforms of known genes 2993 45.77347 7
Osa11LNT0536300.1 11 Osa11LNG0536300 11933030-11933303 intergenetic lncRNA (lincRNA) 274 30.65693 1
Osa11LNT0536400.1 11 Osa11LNG0536400 11933030-11933303 intergenetic lncRNA (lincRNA) 274 30.65693 1
Osa11LNT0536500.1 11 Osa11LNG0536500 11958925-11959201 intergenetic lncRNA (lincRNA) 277 26.35379 1
Osa11LNT0536600.1 11 Osa11LNG0536600 11958925-11959201 intergenetic lncRNA (lincRNA) 277 26.35379 1
Osa11LNT0096100.2 11 Osa11LNG0096100 12010689-12013524 intergenetic lncRNA (lincRNA) 2073 44.62132 3
Osa11LNT0096100.1 11 Osa11LNG0096100 12010689-12013524 intergenetic lncRNA (lincRNA) 2192 44.11496 2
Osa11LNT0096200.1 11 Osa11LNG0096200 12143152-12148328 intergenetic lncRNA (lincRNA) 1477 38.99797 6
Osa11LNT0096300.1 11 Osa11LNG0096300 12510081-12511257 long non-coding(lnc) isoforms of known genes 830 40.84337 2
Osa11LNT0536700.1 11 Osa11LNG0536700 12778441-12778696 intergenetic lncRNA (lincRNA) 256 26.95312 1
Osa11LNT0536800.1 11 Osa11LNG0536800 12778441-12778696 intergenetic lncRNA (lincRNA) 256 26.95312 1
Osa11LNT0536900.1 11 Osa11LNG0536900 12779522-12779781 intergenetic lncRNA (lincRNA) 260 27.69231 1
Osa11LNT0537000.1 11 Osa11LNG0537000 12779522-12779781 intergenetic lncRNA (lincRNA) 260 27.69231 1
Osa11LNT0096400.1 11 Osa11LNG0096400 12811965-12818201 long non-coding(lnc) isoforms of known genes 3716 53.95587 13
Osa11LNT0096500.1 11 Osa11LNG0096500 12849253-12853420 long non-coding(lnc) isoforms of known genes 1338 52.24215 6
Osa11LNT0096600.1 11 Osa11LNG0096600 13207199-13208488 sense lncRNA 862 52.66821 2
Osa11LNT0096700.1 11 Osa11LNG0096700 13227947-13228180 intergenetic lncRNA (lincRNA) 234 67.94872 1
Osa11LNT0537200.1 11 Osa11LNG0537200 13235594-13235867 intergenetic lncRNA (lincRNA) 274 30.65693 1
Osa11LNT0537100.1 11 Osa11LNG0537100 13235594-13235867 intergenetic lncRNA (lincRNA) 274 30.65693 1
Osa11LNT0084500.1 11 Osa11LNG0084500 1325588-1328957 long non-coding(lnc) isoforms of known genes 2332 45.06861 5
Osa11LNT0084600.1 11 Osa11LNG0084600 1329442-1333406 long non-coding(lnc) isoforms of known genes 1420 49.57746 13
Osa11LNT0096800.1 11 Osa11LNG0096800 13377937-13379488 long non-coding(lnc) isoforms of known genes 1336 59.20659 3
Osa11LNT0537300.1 11 Osa11LNG0537300 13449185-13449436 intergenetic lncRNA (lincRNA) 252 26.5873 1
Osa11LNT0537400.1 11 Osa11LNG0537400 13449185-13449436 intergenetic lncRNA (lincRNA) 252 26.5873 1
Osa11LNT0537500.1 11 Osa11LNG0537500 13449503-13449747 intergenetic lncRNA (lincRNA) 245 27.7551 1
Osa11LNT0537600.1 11 Osa11LNG0537600 13519501-13519777 intergenetic lncRNA (lincRNA) 277 24.54874 1
Osa11LNT0537700.1 11 Osa11LNG0537700 13519501-13519777 intergenetic lncRNA (lincRNA) 277 24.54874 1
Osa11LNT0537800.1 11 Osa11LNG0537800 13520614-13520887 intergenetic lncRNA (lincRNA) 274 24.45255 1
Osa11LNT0537900.1 11 Osa11LNG0537900 13520614-13520887 intergenetic lncRNA (lincRNA) 274 24.45255 1
Osa11LNT0538000.1 11 Osa11LNG0538000 13556785-13557028 intergenetic lncRNA (lincRNA) 244 26.63934 1
Osa11LNT0538100.1 11 Osa11LNG0538100 13557095-13557369 intergenetic lncRNA (lincRNA) 275 24.0 1
Osa11LNT0538200.1 11 Osa11LNG0538200 13557095-13557369 intergenetic lncRNA (lincRNA) 275 24.0 1
Osa11LNT0096900.1 11 Osa11LNG0096900 13631418-13632066 Antisense lncRNA 458 51.31004 2
Osa11LNT0097000.1 11 Osa11LNG0097000 13674238-13675130 intergenetic lncRNA (lincRNA) 802 40.64838 2
Osa11LNT0538400.1 11 Osa11LNG0538400 13698312-13698589 intergenetic lncRNA (lincRNA) 278 30.21583 1
Osa11LNT0538300.1 11 Osa11LNG0538300 13698312-13698589 intergenetic lncRNA (lincRNA) 278 30.21583 1
Osa11LNT0097100.1 11 Osa11LNG0097100 13744266-13749580 long non-coding(lnc) isoforms of known genes 4705 43.61318 4
Osa11LNT0097200.1 11 Osa11LNG0097200 13752562-13757455 long non-coding(lnc) isoforms of known genes 3525 39.94326 4
Osa11LNT0097300.1 11 Osa11LNG0097300 13781808-13782870 intronic lncRNA 641 49.14197 2
Osa11LNT0084700.1 11 Osa11LNG0084700 1381813-1389499 long non-coding(lnc) isoforms of known genes 2472 46.60194 8
Osa11LNT0097400.1 11 Osa11LNG0097400 13969460-13971406 long non-coding(lnc) isoforms of known genes 1774 51.46561 3
Osa11LNT0097600.1 11 Osa11LNG0097600 14128303-14129720 intergenetic lncRNA (lincRNA) 1418 39.70381 1
Osa11LNT0097500.1 11 Osa11LNG0097500 14153505-14162138 intergenetic lncRNA (lincRNA) 989 52.0728 3
Osa11LNT0097700.1 11 Osa11LNG0097700 14184030-14188141 intergenetic lncRNA (lincRNA) 1417 54.69301 5
Osa11LNT0097800.1 11 Osa11LNG0097800 14249966-14250786 intergenetic lncRNA (lincRNA) 821 54.6894 1
Osa11LNT0538500.1 11 Osa11LNG0538500 14280938-14281215 intergenetic lncRNA (lincRNA) 278 26.97842 1
Osa11LNT0538600.1 11 Osa11LNG0538600 14280938-14281215 intergenetic lncRNA (lincRNA) 278 26.97842 1
Osa11LNT0097900.1 11 Osa11LNG0097900 14312373-14314641 long non-coding(lnc) isoforms of known genes 2088 44.15709 3
Osa11LNT0098000.1 11 Osa11LNG0098000 14321331-14323536 intergenetic lncRNA (lincRNA) 902 39.68958 4
Osa11LNT0098100.1 11 Osa11LNG0098100 14327055-14327318 intergenetic lncRNA (lincRNA) 264 32.57576 1
Osa11LNT0538700.1 11 Osa11LNG0538700 14388212-14388473 intergenetic lncRNA (lincRNA) 262 29.00763 1
Osa11LNT0538900.1 11 Osa11LNG0538900 14424694-14424955 intergenetic lncRNA (lincRNA) 262 28.62595 1
Osa11LNT0538800.1 11 Osa11LNG0538800 14424694-14424955 intergenetic lncRNA (lincRNA) 262 28.62595 1
Osa11LNT0098200.1 11 Osa11LNG0098200 14516730-14517500 intergenetic lncRNA (lincRNA) 771 52.26978 1
Osa11LNT0098300.1 11 Osa11LNG0098300 14524528-14524884 intergenetic lncRNA (lincRNA) 357 38.37535 1
Osa11LNT0098400.1 11 Osa11LNG0098400 14569169-14570917 long non-coding(lnc) isoforms of known genes 1168 65.06849 7
Osa11LNT0539000.1 11 Osa11LNG0539000 14603360-14603636 intergenetic lncRNA (lincRNA) 277 25.27076 1
Osa11LNT0539100.1 11 Osa11LNG0539100 14603360-14603636 intergenetic lncRNA (lincRNA) 277 25.27076 1
Osa11LNT0084800.1 11 Osa11LNG0084800 1472913-1477581 long non-coding(lnc) isoforms of known genes 1138 46.74868 3
Osa11LNT0084800.3 11 Osa11LNG0084800 1472913-1477581 long non-coding(lnc) isoforms of known genes 3859 39.10339 3
Osa11LNT0084800.2 11 Osa11LNG0084800 1472913-1477581 long non-coding(lnc) isoforms of known genes 2273 41.26705 3
Osa11LNT0539200.1 11 Osa11LNG0539200 14929626-14929899 intergenetic lncRNA (lincRNA) 274 31.0219 1
Osa11LNT0539300.1 11 Osa11LNG0539300 14929626-14929899 intergenetic lncRNA (lincRNA) 274 31.0219 1
Osa11LNT0098500.1 11 Osa11LNG0098500 14973055-14974237 intergenetic lncRNA (lincRNA) 1084 61.80812 2
Osa11LNT0098600.1 11 Osa11LNG0098600 15228047-15228637 intergenetic lncRNA (lincRNA) 591 42.63959 1
Osa11LNT0098700.1 11 Osa11LNG0098700 15310708-15311259 intergenetic lncRNA (lincRNA) 446 42.15247 2
Osa11LNT0084900.2 11 Osa11LNG0084900 1554616-1559857 long non-coding(lnc) isoforms of known genes 1548 42.76486 7
Osa11LNT0084900.1 11 Osa11LNG0084900 1554616-1559857 long non-coding(lnc) isoforms of known genes 2560 47.07031 11
Osa11LNT0539400.1 11 Osa11LNG0539400 15603537-15603736 intergenetic lncRNA (lincRNA) 200 41.5 1
Osa11LNT0539500.1 11 Osa11LNG0539500 15604130-15604403 intergenetic lncRNA (lincRNA) 274 23.35766 1
Osa11LNT0098800.1 11 Osa11LNG0098800 16107209-16107712 intergenetic lncRNA (lincRNA) 504 53.37302 1
Osa11LNT0098900.1 11 Osa11LNG0098900 16250249-16258871 long non-coding(lnc) isoforms of known genes 2007 49.72596 7
Osa11LNT0099000.1 11 Osa11LNG0099000 16457157-16462178 intergenetic lncRNA (lincRNA) 498 39.35743 2
Osa11LNT0099100.1 11 Osa11LNG0099100 16577777-16579506 intergenetic lncRNA (lincRNA) 895 43.12849 4
Osa11LNT0085000.1 11 Osa11LNG0085000 1657888-1668410 long non-coding(lnc) isoforms of known genes 2121 45.45026 18
Osa11LNT0099200.1 11 Osa11LNG0099200 16711076-16730706 long non-coding(lnc) isoforms of known genes 776 47.16495 2
Osa11LNT0099400.1 11 Osa11LNG0099400 16866309-16872474 long non-coding(lnc) isoforms of known genes 2508 45.69378 8
Osa11LNT0099300.1 11 Osa11LNG0099300 16881841-16882465 intergenetic lncRNA (lincRNA) 625 32.48 1
Osa11LNT0099500.1 11 Osa11LNG0099500 16917810-16919746 long non-coding(lnc) isoforms of known genes 959 55.57873 3
Osa11LNT0099600.1 11 Osa11LNG0099600 17071698-17075247 intergenetic lncRNA (lincRNA) 3102 40.39329 4
Osa11LNT0099700.1 11 Osa11LNG0099700 17127130-17134252 long non-coding(lnc) isoforms of known genes 6803 43.9512 3
Osa11LNT0085300.1 11 Osa11LNG0085300 1718538-1735147 long non-coding(lnc) isoforms of known genes 5952 42.69153 35
Osa11LNT0099800.1 11 Osa11LNG0099800 17210727-17212826 long non-coding(lnc) isoforms of known genes 714 48.59944 7
Osa11LNT0539600.1 11 Osa11LNG0539600 17229422-17229626 intergenetic lncRNA (lincRNA) 205 23.41463 1
Osa11LNT0099900.1 11 Osa11LNG0099900 17251908-17253151 intergenetic lncRNA (lincRNA) 855 51.34503 2