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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs

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Transcript id Chrom Gene Location Classification Length GC Content(%) Exon Number
Osa08LNT0550200.1 8 Osa08LNG0550200 9929896-9930170 intergenetic lncRNA (lincRNA) 275 28.36364 1
Osa09LNT0425200.1 9 Osa09LNG0425200 1001-9416 Antisense lncRNA 488 61.27049 2
Osa09LNT0425100.1 9 Osa09LNG0425100 1001-9416 sense lncRNA 488 61.27049 2
Osa09LNT0580600.1 9 Osa09LNG0580600 10124465-10124677 intergenetic lncRNA (lincRNA) 213 25.8216 1
Osa09LNT0580800.1 9 Osa09LNG0580800 10193453-10193694 intergenetic lncRNA (lincRNA) 242 26.8595 1
Osa09LNT0580700.1 9 Osa09LNG0580700 10193453-10193694 intergenetic lncRNA (lincRNA) 242 26.8595 1
Osa09LNT0580900.1 9 Osa09LNG0580900 10193765-10194030 intergenetic lncRNA (lincRNA) 266 29.69925 1
Osa09LNT0581000.1 9 Osa09LNG0581000 10193765-10194030 intergenetic lncRNA (lincRNA) 266 29.69925 1
Osa09LNT0433600.3 9 Osa09LNG0433600 10226022-10228864 intergenetic lncRNA (lincRNA) 1079 49.11956 4
Osa09LNT0433600.2 9 Osa09LNG0433600 10226022-10228864 intergenetic lncRNA (lincRNA) 909 51.48515 3
Osa09LNT0433600.1 9 Osa09LNG0433600 10226022-10228864 intergenetic lncRNA (lincRNA) 1736 43.08756 3
Osa09LNT0433900.1 9 Osa09LNG0433900 10399132-10405794 long non-coding(lnc) isoforms of known genes 2553 44.57501 9
Osa09LNT0433900.2 9 Osa09LNG0433900 10399132-10405794 long non-coding(lnc) isoforms of known genes 2381 44.72911 9
Osa09LNT0433900.3 9 Osa09LNG0433900 10399132-10405794 long non-coding(lnc) isoforms of known genes 1770 43.44633 8
Osa09LNT0433700.1 9 Osa09LNG0433700 10491279-10493399 intergenetic lncRNA (lincRNA) 1884 49.04459 2
Osa09LNT0434100.1 9 Osa09LNG0434100 10605026-10621833 long non-coding(lnc) isoforms of known genes 3325 41.26316 3
Osa09LNT0433800.1 9 Osa09LNG0433800 10626128-10626767 intergenetic lncRNA (lincRNA) 640 43.75 1
Osa09LNT0434000.1 9 Osa09LNG0434000 10749111-10750151 intergenetic lncRNA (lincRNA) 1041 54.17867 1
Osa09LNT0434200.1 9 Osa09LNG0434200 10807218-10807667 intergenetic lncRNA (lincRNA) 450 44.66667 1
Osa09LNT0434300.1 9 Osa09LNG0434300 10849769-10852021 long non-coding(lnc) isoforms of known genes 1133 41.48279 6
Osa09LNT0434400.2 9 Osa09LNG0434400 10872609-10877953 long non-coding(lnc) isoforms of known genes 1670 43.59281 8
Osa09LNT0434400.1 9 Osa09LNG0434400 10872609-10877953 long non-coding(lnc) isoforms of known genes 2141 41.98972 7
Osa09LNT0434700.1 9 Osa09LNG0434700 10928396-10930718 long non-coding(lnc) isoforms of known genes 1461 44.62697 9
Osa09LNT0434700.2 9 Osa09LNG0434700 10928396-10930718 long non-coding(lnc) isoforms of known genes 1348 45.54896 10
Osa09LNT0434500.1 9 Osa09LNG0434500 10977544-10981272 intergenetic lncRNA (lincRNA) 2202 50.09083 9
Osa09LNT0434600.1 9 Osa09LNG0434600 10983350-10985340 intergenetic lncRNA (lincRNA) 688 42.73256 3
Osa09LNT0581200.1 9 Osa09LNG0581200 11064303-11064578 intergenetic lncRNA (lincRNA) 276 26.44928 1
Osa09LNT0581100.1 9 Osa09LNG0581100 11064303-11064578 intergenetic lncRNA (lincRNA) 276 26.44928 1
Osa09LNT0434800.1 9 Osa09LNG0434800 11139516-11140455 intergenetic lncRNA (lincRNA) 940 47.76596 1
Osa09LNT0434900.1 9 Osa09LNG0434900 11442059-11444517 long non-coding(lnc) isoforms of known genes 2344 42.23549 2
Osa09LNT0435000.1 9 Osa09LNG0435000 11531010-11533560 long non-coding(lnc) isoforms of known genes 832 60.57692 4
Osa09LNT0435200.1 9 Osa09LNG0435200 11538275-11540591 long non-coding(lnc) isoforms of known genes 995 50.75377 5
Osa09LNT0435100.1 9 Osa09LNG0435100 11540699-11556530 long non-coding(lnc) isoforms of known genes 2216 49.54874 4
Osa09LNT0435300.1 9 Osa09LNG0435300 11631649-11632253 intergenetic lncRNA (lincRNA) 605 49.42149 1
Osa09LNT0426400.1 9 Osa09LNG0426400 1168870-1173035 long non-coding(lnc) isoforms of known genes 925 50.91892 4
Osa09LNT0435400.1 9 Osa09LNG0435400 11759088-11759582 intergenetic lncRNA (lincRNA) 495 58.78788 1
Osa09LNT0435500.1 9 Osa09LNG0435500 11812486-11821425 sense lncRNA 2751 45.83788 2
Osa09LNT0435600.2 9 Osa09LNG0435600 11909121-11912702 long non-coding(lnc) isoforms of known genes 1420 53.59155 12
Osa09LNT0435600.1 9 Osa09LNG0435600 11909121-11912702 long non-coding(lnc) isoforms of known genes 1403 53.88453 12
Osa09LNT0435700.1 9 Osa09LNG0435700 11925025-11930102 Antisense lncRNA 1284 45.95016 6
Osa09LNT0425700.1 9 Osa09LNG0425700 12095-28191 Antisense lncRNA 241 58.50622 3
Osa09LNT0426500.1 9 Osa09LNG0426500 1221177-1224737 long non-coding(lnc) isoforms of known genes 1728 45.08102 7
Osa09LNT0581300.1 9 Osa09LNG0581300 12300329-12300573 intergenetic lncRNA (lincRNA) 245 26.12245 1
Osa09LNT0581400.1 9 Osa09LNG0581400 12300640-12300913 intergenetic lncRNA (lincRNA) 274 23.72263 1
Osa09LNT0581500.1 9 Osa09LNG0581500 12300640-12300913 intergenetic lncRNA (lincRNA) 274 23.72263 1
Osa09LNT0426600.1 9 Osa09LNG0426600 1239544-1241572 intergenetic lncRNA (lincRNA) 2029 43.37112 1
Osa09LNT0435800.1 9 Osa09LNG0435800 12397872-12399134 intergenetic lncRNA (lincRNA) 1263 56.53207 1
Osa09LNT0435900.1 9 Osa09LNG0435900 12402201-12402773 intergenetic lncRNA (lincRNA) 573 33.50785 1
Osa09LNT0436000.1 9 Osa09LNG0436000 12403241-12403612 intergenetic lncRNA (lincRNA) 372 41.12903 1
Osa09LNT0436100.1 9 Osa09LNG0436100 12431035-12434545 long non-coding(lnc) isoforms of known genes 1320 49.39394 6