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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs

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Transcript id Chrom Gene Location Classification Length GC Content(%) Exon Number
Osa09LNT0581600.1 9 Osa09LNG0581600 12499588-12499861 intergenetic lncRNA (lincRNA) 274 25.18248 1
Osa09LNT0581700.1 9 Osa09LNG0581700 12536189-12536424 intergenetic lncRNA (lincRNA) 236 23.30508 1
Osa09LNT0436200.1 9 Osa09LNG0436200 12545096-12545303 intergenetic lncRNA (lincRNA) 208 37.5 1
Osa09LNT0436300.1 9 Osa09LNG0436300 12644012-12650074 long non-coding(lnc) isoforms of known genes 3598 43.52418 4
Osa09LNT0436400.1 9 Osa09LNG0436400 12662856-12667520 long non-coding(lnc) isoforms of known genes 3413 47.72927 6
Osa09LNT0436500.1 9 Osa09LNG0436500 12839838-12840789 intergenetic lncRNA (lincRNA) 952 54.51681 1
Osa09LNT0436600.1 9 Osa09LNG0436600 12841735-12842320 intergenetic lncRNA (lincRNA) 586 35.15358 1
Osa09LNT0581800.1 9 Osa09LNG0581800 13114441-13114659 intergenetic lncRNA (lincRNA) 219 32.42009 1
Osa09LNT0436700.1 9 Osa09LNG0436700 13140415-13147152 long non-coding(lnc) isoforms of known genes 3133 41.07884 4
Osa09LNT0436700.2 9 Osa09LNG0436700 13140415-13147152 long non-coding(lnc) isoforms of known genes 1351 50.92524 5
Osa09LNT0436800.1 9 Osa09LNG0436800 13174380-13178138 long non-coding(lnc) isoforms of known genes 1701 50.38213 11
Osa09LNT0436900.1 9 Osa09LNG0436900 13185362-13191479 long non-coding(lnc) isoforms of known genes 2230 46.72646 10
Osa09LNT0437000.1 9 Osa09LNG0437000 13191537-13191968 intergenetic lncRNA (lincRNA) 432 65.97222 1
Osa09LNT0425800.1 9 Osa09LNG0425800 13199-30221 Antisense lncRNA 1167 64.78149 3
Osa09LNT0437100.1 9 Osa09LNG0437100 13266471-13267752 intergenetic lncRNA (lincRNA) 617 58.18476 2
Osa09LNT0575900.1 9 Osa09LNG0575900 1340412-1340685 intergenetic lncRNA (lincRNA) 274 29.56204 1
Osa09LNT0576000.1 9 Osa09LNG0576000 1340412-1340685 intergenetic lncRNA (lincRNA) 274 29.56204 1
Osa09LNT0582000.1 9 Osa09LNG0582000 13469588-13469843 intergenetic lncRNA (lincRNA) 256 25.0 1
Osa09LNT0581900.1 9 Osa09LNG0581900 13469588-13469843 intergenetic lncRNA (lincRNA) 256 25.0 1
Osa09LNT0437200.1 9 Osa09LNG0437200 13490066-13490553 intergenetic lncRNA (lincRNA) 488 57.37705 1
Osa09LNT0425900.1 9 Osa09LNG0425900 13565-22293 sense lncRNA 801 64.29463 2
Osa09LNT0437300.2 9 Osa09LNG0437300 13567238-13575112 long non-coding(lnc) isoforms of known genes 2963 49.61188 8
Osa09LNT0437300.1 9 Osa09LNG0437300 13567238-13575112 long non-coding(lnc) isoforms of known genes 5649 42.75093 6
Osa09LNT0437300.3 9 Osa09LNG0437300 13567238-13575112 long non-coding(lnc) isoforms of known genes 4515 47.08749 6
Osa09LNT0437400.1 9 Osa09LNG0437400 13626143-13629832 long non-coding(lnc) isoforms of known genes 2008 53.63546 12
Osa09LNT0437500.1 9 Osa09LNG0437500 13695402-13699567 long non-coding(lnc) isoforms of known genes 2038 39.94112 6
Osa09LNT0437600.1 9 Osa09LNG0437600 13758810-13759025 intergenetic lncRNA (lincRNA) 216 43.05556 1
Osa09LNT0437700.1 9 Osa09LNG0437700 13904871-13907628 sense lncRNA 561 51.3369 2
Osa09LNT0582100.1 9 Osa09LNG0582100 13910294-13910550 intergenetic lncRNA (lincRNA) 257 28.40467 1
Osa09LNT0437800.2 9 Osa09LNG0437800 14110047-14118731 long non-coding(lnc) isoforms of known genes 5296 44.2787 12
Osa09LNT0437800.1 9 Osa09LNG0437800 14110047-14118731 long non-coding(lnc) isoforms of known genes 5793 46.57345 11
Osa09LNT0437900.1 9 Osa09LNG0437900 14282555-14283012 intergenetic lncRNA (lincRNA) 458 48.9083 1
Osa09LNT0438300.1 9 Osa09LNG0438300 14294052-14298838 sense lncRNA 779 47.36842 2
Osa09LNT0438300.10 9 Osa09LNG0438300 14294052-14298838 sense lncRNA 716 49.44134 2
Osa09LNT0438300.9 9 Osa09LNG0438300 14294052-14298838 sense lncRNA 724 49.03315 2
Osa09LNT0438300.8 9 Osa09LNG0438300 14294052-14298838 sense lncRNA 724 49.03315 2
Osa09LNT0438300.7 9 Osa09LNG0438300 14294052-14298838 sense lncRNA 724 49.03315 3
Osa09LNT0438300.4 9 Osa09LNG0438300 14294052-14298838 sense lncRNA 777 47.23295 2
Osa09LNT0438300.3 9 Osa09LNG0438300 14294052-14298838 sense lncRNA 777 47.23295 2
Osa09LNT0438300.6 9 Osa09LNG0438300 14294052-14298838 sense lncRNA 763 47.57536 3
Osa09LNT0438300.2 9 Osa09LNG0438300 14294052-14298838 sense lncRNA 775 47.35484 3
Osa09LNT0438300.5 9 Osa09LNG0438300 14294052-14298838 sense lncRNA 774 47.28682 2
Osa09LNT0438200.1 9 Osa09LNG0438200 14325838-14330636 sense lncRNA 780 48.07692 3
Osa09LNT0438200.4 9 Osa09LNG0438200 14325838-14330636 sense lncRNA 748 48.79679 3
Osa09LNT0438200.3 9 Osa09LNG0438200 14325838-14330636 sense lncRNA 748 48.79679 3
Osa09LNT0438200.5 9 Osa09LNG0438200 14325838-14330636 sense lncRNA 840 47.7381 2
Osa09LNT0438200.2 9 Osa09LNG0438200 14325838-14330636 sense lncRNA 650 50.61538 2
Osa09LNT0424700.1 9 Osa09LNG0424700 143403-146101 Antisense lncRNA 1131 39.16888 2
Osa09LNT0438100.1 9 Osa09LNG0438100 14342190-14344926 sense lncRNA 732 49.04372 2
Osa09LNT0438000.1 9 Osa09LNG0438000 14346101-14346465 intergenetic lncRNA (lincRNA) 365 39.72603 1