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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs

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Transcript id Chrom Gene Location Classification Length GC Content(%) Exon Number
Osa09LNT0430200.2 9 Osa09LNG0430200 5835485-5843899 long non-coding(lnc) isoforms of known genes 4557 40.00439 10
Osa09LNT0425500.7 9 Osa09LNG0425500 5924-32454 Antisense lncRNA 2746 61.32556 2
Osa09LNT0425500.5 9 Osa09LNG0425500 5924-32454 Antisense lncRNA 2747 61.30324 4
Osa09LNT0425500.6 9 Osa09LNG0425500 5924-32454 Antisense lncRNA 2746 61.32556 3
Osa09LNT0425500.4 9 Osa09LNG0425500 5924-32454 Antisense lncRNA 2731 61.47931 2
Osa09LNT0425500.3 9 Osa09LNG0425500 5924-32454 Antisense lncRNA 2742 61.26915 3
Osa09LNT0425500.2 9 Osa09LNG0425500 5924-32454 Antisense lncRNA 3493 60.14887 3
Osa09LNT0425500.1 9 Osa09LNG0425500 5924-32454 Antisense lncRNA 2747 61.30324 4
Osa09LNT0430300.1 9 Osa09LNG0430300 5935135-5940509 long non-coding(lnc) isoforms of known genes 1490 41.34228 9
Osa09LNT0430400.1 9 Osa09LNG0430400 5991204-5996499 long non-coding(lnc) isoforms of known genes 1214 50.08237 4
Osa09LNT0430500.1 9 Osa09LNG0430500 6037941-6049270 long non-coding(lnc) isoforms of known genes 6717 45.54116 7
Osa09LNT0430600.1 9 Osa09LNG0430600 6252094-6260815 long non-coding(lnc) isoforms of known genes 2183 51.99267 12
Osa09LNT0430700.1 9 Osa09LNG0430700 6368476-6370099 long non-coding(lnc) isoforms of known genes 591 44.50085 5
Osa09LNT0430900.1 9 Osa09LNG0430900 6374327-6383568 long non-coding(lnc) isoforms of known genes 2740 43.86861 20
Osa09LNT0425000.1 9 Osa09LNG0425000 638058-638396 intergenetic lncRNA (lincRNA) 339 57.22714 1
Osa09LNT0430800.1 9 Osa09LNG0430800 6396831-6397743 intergenetic lncRNA (lincRNA) 913 56.07886 1
Osa09LNT0578600.1 9 Osa09LNG0578600 6664523-6664796 intergenetic lncRNA (lincRNA) 274 24.08759 1
Osa09LNT0578700.1 9 Osa09LNG0578700 6664523-6664796 intergenetic lncRNA (lincRNA) 274 24.08759 1
Osa09LNT0578800.1 9 Osa09LNG0578800 6665009-6665270 intergenetic lncRNA (lincRNA) 262 41.22137 1
Osa09LNT0425600.1 9 Osa09LNG0425600 6682-33200 sense lncRNA 2735 58.17185 4
Osa09LNT0425600.2 9 Osa09LNG0425600 6682-33200 sense lncRNA 2733 58.21442 3
Osa09LNT0431000.1 9 Osa09LNG0431000 6775339-6776167 intergenetic lncRNA (lincRNA) 647 49.14992 2
Osa09LNT0578900.1 9 Osa09LNG0578900 7039787-7040063 intergenetic lncRNA (lincRNA) 277 27.79783 1
Osa09LNT0431100.1 9 Osa09LNG0431100 7246565-7247343 long non-coding(lnc) isoforms of known genes 501 40.31936 3
Osa09LNT0431200.1 9 Osa09LNG0431200 7293062-7300542 long non-coding(lnc) isoforms of known genes 3511 49.78639 4
Osa09LNT0431300.1 9 Osa09LNG0431300 7347496-7351866 long non-coding(lnc) isoforms of known genes 1640 51.46341 8
Osa09LNT0579100.1 9 Osa09LNG0579100 7678644-7678919 intergenetic lncRNA (lincRNA) 276 32.97101 1
Osa09LNT0579000.1 9 Osa09LNG0579000 7678644-7678919 intergenetic lncRNA (lincRNA) 276 32.97101 1
Osa09LNT0579200.1 9 Osa09LNG0579200 7814022-7814251 intergenetic lncRNA (lincRNA) 230 48.69565 1
Osa09LNT0431400.1 9 Osa09LNG0431400 7871598-7872533 sense lncRNA 745 45.2349 2
Osa09LNT0431500.1 9 Osa09LNG0431500 7918463-7918701 intronic lncRNA 239 31.79916 1
Osa09LNT0431600.1 9 Osa09LNG0431600 7918466-7918698 intronic lncRNA 233 32.61803 1
Osa09LNT0579300.1 9 Osa09LNG0579300 7980960-7981164 intergenetic lncRNA (lincRNA) 205 37.56098 1
Osa09LNT0426200.1 9 Osa09LNG0426200 805611-805815 intronic lncRNA 205 23.90244 1
Osa09LNT0431700.2 9 Osa09LNG0431700 8200014-8203350 long non-coding(lnc) isoforms of known genes 2113 47.32608 5
Osa09LNT0431700.1 9 Osa09LNG0431700 8200014-8203350 long non-coding(lnc) isoforms of known genes 2125 47.38824 5
Osa09LNT0579500.1 9 Osa09LNG0579500 8214039-8214313 intergenetic lncRNA (lincRNA) 275 24.0 1
Osa09LNT0579400.1 9 Osa09LNG0579400 8214039-8214313 intergenetic lncRNA (lincRNA) 275 24.0 1
Osa09LNT0431800.1 9 Osa09LNG0431800 8214804-8216500 long non-coding(lnc) isoforms of known genes 991 56.30676 4
Osa09LNT0426300.1 9 Osa09LNG0426300 854841-860480 long non-coding(lnc) isoforms of known genes 1920 41.45833 9
Osa09LNT0431900.1 9 Osa09LNG0431900 8603165-8609484 long non-coding(lnc) isoforms of known genes 1546 48.77102 11
Osa09LNT0579600.1 9 Osa09LNG0579600 8635071-8635341 intergenetic lncRNA (lincRNA) 271 39.11439 1
Osa09LNT0432300.2 9 Osa09LNG0432300 8647061-8661573 long non-coding(lnc) isoforms of known genes 6183 40.87013 16
Osa09LNT0432300.3 9 Osa09LNG0432300 8647061-8661573 long non-coding(lnc) isoforms of known genes 5496 42.01237 16
Osa09LNT0432300.1 9 Osa09LNG0432300 8647061-8661573 long non-coding(lnc) isoforms of known genes 4663 46.42934 19
Osa09LNT0432000.1 9 Osa09LNG0432000 8664685-8667873 long non-coding(lnc) isoforms of known genes 2810 50.92527 2
Osa09LNT0432000.2 9 Osa09LNG0432000 8664685-8667873 long non-coding(lnc) isoforms of known genes 2621 51.50706 2
Osa09LNT0432100.1 9 Osa09LNG0432100 8689298-8691986 intergenetic lncRNA (lincRNA) 2689 46.48568 1
Osa09LNT0432200.1 9 Osa09LNG0432200 8695436-8696271 long non-coding(lnc) isoforms of known genes 722 47.64543 2
Osa09LNT0432500.1 9 Osa09LNG0432500 8710181-8716835 long non-coding(lnc) isoforms of known genes 3669 43.74489 7