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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs

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Transcript id Chrom Gene Location Classification Length GC Content(%) Exon Number
Osa11LNT0539700.1 11 Osa11LNG0539700 17282089-17282293 intergenetic lncRNA (lincRNA) 205 37.07317 1
Osa11LNT0100000.1 11 Osa11LNG0100000 17289200-17296384 sense lncRNA 1112 48.92086 5
Osa11LNT0100100.1 11 Osa11LNG0100100 17564453-17565175 intergenetic lncRNA (lincRNA) 723 54.08022 1
Osa11LNT0100200.1 11 Osa11LNG0100200 17616598-17620429 long non-coding(lnc) isoforms of known genes 1940 62.83505 12
Osa11LNT0539800.1 11 Osa11LNG0539800 17707668-17707893 intergenetic lncRNA (lincRNA) 226 49.55752 1
Osa11LNT0540000.1 11 Osa11LNG0540000 17743075-17743349 intergenetic lncRNA (lincRNA) 275 24.72727 1
Osa11LNT0539900.1 11 Osa11LNG0539900 17743075-17743349 intergenetic lncRNA (lincRNA) 275 24.72727 1
Osa11LNT0085100.1 11 Osa11LNG0085100 1777335-1781010 long non-coding(lnc) isoforms of known genes 3063 43.71531 2
Osa11LNT0085200.1 11 Osa11LNG0085200 1781776-1786597 long non-coding(lnc) isoforms of known genes 900 53.66667 6
Osa11LNT0540100.1 11 Osa11LNG0540100 17890702-17890939 intergenetic lncRNA (lincRNA) 238 46.21849 1
Osa11LNT0100300.1 11 Osa11LNG0100300 17983538-17984324 intergenetic lncRNA (lincRNA) 787 51.46125 1
Osa11LNT0100400.1 11 Osa11LNG0100400 18156237-18157526 long non-coding(lnc) isoforms of known genes 811 50.06165 2
Osa11LNT0100500.1 11 Osa11LNG0100500 18337730-18342822 long non-coding(lnc) isoforms of known genes 1965 46.41221 10
Osa11LNT0100600.2 11 Osa11LNG0100600 18391513-18399533 intergenetic lncRNA (lincRNA) 5293 43.00019 4
Osa11LNT0100600.1 11 Osa11LNG0100600 18391513-18399533 intergenetic lncRNA (lincRNA) 5507 44.67042 5
Osa11LNT0540200.1 11 Osa11LNG0540200 18421880-18422083 intergenetic lncRNA (lincRNA) 204 22.05882 1
Osa11LNT0085400.2 11 Osa11LNG0085400 1842242-1847877 long non-coding(lnc) isoforms of known genes 1651 57.48031 3
Osa11LNT0085400.1 11 Osa11LNG0085400 1842242-1847877 long non-coding(lnc) isoforms of known genes 1525 57.11475 3
Osa11LNT0100800.1 11 Osa11LNG0100800 18531654-18541502 long non-coding(lnc) isoforms of known genes 3005 41.93012 21
Osa11LNT0100700.2 11 Osa11LNG0100700 18543987-18550593 long non-coding(lnc) isoforms of known genes 2380 45.54622 8
Osa11LNT0100700.1 11 Osa11LNG0100700 18543987-18550593 long non-coding(lnc) isoforms of known genes 2375 45.55789 8
Osa11LNT0101100.4 11 Osa11LNG0101100 18552567-18570136 long non-coding(lnc) isoforms of known genes 5348 43.56769 35
Osa11LNT0101100.6 11 Osa11LNG0101100 18552567-18570136 long non-coding(lnc) isoforms of known genes 2894 42.15619 15
Osa11LNT0101100.1 11 Osa11LNG0101100 18552567-18570136 long non-coding(lnc) isoforms of known genes 2114 44.56008 17
Osa11LNT0101100.7 11 Osa11LNG0101100 18552567-18570136 long non-coding(lnc) isoforms of known genes 5209 43.88558 37
Osa11LNT0101100.5 11 Osa11LNG0101100 18552567-18570136 long non-coding(lnc) isoforms of known genes 5290 43.76181 38
Osa11LNT0101100.3 11 Osa11LNG0101100 18552567-18570136 long non-coding(lnc) isoforms of known genes 5413 43.58027 35
Osa11LNT0101100.2 11 Osa11LNG0101100 18552567-18570136 long non-coding(lnc) isoforms of known genes 6410 42.35569 33
Osa11LNT0100900.1 11 Osa11LNG0100900 18660080-18665678 intergenetic lncRNA (lincRNA) 1831 39.75969 8
Osa11LNT0540300.1 11 Osa11LNG0540300 18774258-18774475 intergenetic lncRNA (lincRNA) 218 42.66055 1
Osa11LNT0085600.1 11 Osa11LNG0085600 1880523-1887440 long non-coding(lnc) isoforms of known genes 1549 48.09555 12
Osa11LNT0101000.1 11 Osa11LNG0101000 18860469-18862074 intergenetic lncRNA (lincRNA) 1606 41.96762 1
Osa11LNT0101200.1 11 Osa11LNG0101200 18935504-18941712 long non-coding(lnc) isoforms of known genes 3189 49.92161 15
Osa11LNT0101200.2 11 Osa11LNG0101200 18935504-18941712 long non-coding(lnc) isoforms of known genes 3184 49.93719 15
Osa11LNT0540400.1 11 Osa11LNG0540400 18955775-18956049 intergenetic lncRNA (lincRNA) 275 28.72727 1
Osa11LNT0540500.1 11 Osa11LNG0540500 18955775-18956049 intergenetic lncRNA (lincRNA) 275 28.72727 1
Osa11LNT0101300.1 11 Osa11LNG0101300 19112692-19116593 long non-coding(lnc) isoforms of known genes 1980 45.45455 5
Osa11LNT0540600.1 11 Osa11LNG0540600 19155760-19156004 intergenetic lncRNA (lincRNA) 245 26.12245 1
Osa11LNT0540800.1 11 Osa11LNG0540800 19213902-19214176 intergenetic lncRNA (lincRNA) 275 26.90909 1
Osa11LNT0540700.1 11 Osa11LNG0540700 19213902-19214176 intergenetic lncRNA (lincRNA) 275 26.90909 1
Osa11LNT0101400.1 11 Osa11LNG0101400 19354433-19354685 intronic lncRNA 253 30.83004 1
Osa11LNT0540900.1 11 Osa11LNG0540900 19367928-19368201 intergenetic lncRNA (lincRNA) 274 26.64234 1
Osa11LNT0101500.1 11 Osa11LNG0101500 19421487-19429158 long non-coding(lnc) isoforms of known genes 2698 41.84581 15
Osa11LNT0101600.1 11 Osa11LNG0101600 19448821-19449047 Antisense lncRNA 227 27.31278 1
Osa11LNT0101700.2 11 Osa11LNG0101700 19449011-19453827 long non-coding(lnc) isoforms of known genes 2630 44.03042 7
Osa11LNT0101700.1 11 Osa11LNG0101700 19449011-19453827 long non-coding(lnc) isoforms of known genes 2596 44.2604 7
Osa11LNT0101700.4 11 Osa11LNG0101700 19449011-19453827 long non-coding(lnc) isoforms of known genes 2603 44.29504 7
Osa11LNT0101700.3 11 Osa11LNG0101700 19449011-19453827 long non-coding(lnc) isoforms of known genes 2616 44.30428 7
Osa11LNT0085500.1 11 Osa11LNG0085500 1948262-1948630 intergenetic lncRNA (lincRNA) 369 63.41463 1
Osa11LNT0101800.1 11 Osa11LNG0101800 19494669-19495077 intergenetic lncRNA (lincRNA) 409 34.71883 1
Osa11LNT0101900.1 11 Osa11LNG0101900 19496217-19499904 intergenetic lncRNA (lincRNA) 334 59.28144 2
Osa11LNT0541000.1 11 Osa11LNG0541000 19515949-19516222 intergenetic lncRNA (lincRNA) 274 31.0219 1
Osa11LNT0541100.1 11 Osa11LNG0541100 19515949-19516222 intergenetic lncRNA (lincRNA) 274 31.0219 1
Osa11LNT0541200.1 11 Osa11LNG0541200 19540735-19540936 intergenetic lncRNA (lincRNA) 202 51.9802 1
Osa11LNT0102100.1 11 Osa11LNG0102100 19591333-19593834 sense lncRNA 592 60.81081 5
Osa11LNT0102200.1 11 Osa11LNG0102200 19594457-19595151 Antisense lncRNA 575 45.73913 2
Osa11LNT0102000.1 11 Osa11LNG0102000 19595464-19596465 long non-coding(lnc) isoforms of known genes 920 69.67391 2
Osa11LNT0102300.1 11 Osa11LNG0102300 19709715-19718580 long non-coding(lnc) isoforms of known genes 2467 46.1289 17
Osa11LNT0102600.1 11 Osa11LNG0102600 19723123-19734539 long non-coding(lnc) isoforms of known genes 2565 45.34113 16
Osa11LNT0541300.1 11 Osa11LNG0541300 19764749-19764992 intergenetic lncRNA (lincRNA) 244 28.27869 1
Osa11LNT0541400.1 11 Osa11LNG0541400 19764749-19764992 intergenetic lncRNA (lincRNA) 244 28.27869 1
Osa11LNT0541500.1 11 Osa11LNG0541500 19765059-19765333 intergenetic lncRNA (lincRNA) 275 25.09091 1
Osa11LNT0541600.1 11 Osa11LNG0541600 19765059-19765333 intergenetic lncRNA (lincRNA) 275 25.09091 1
Osa11LNT0102400.1 11 Osa11LNG0102400 19878618-19879625 intergenetic lncRNA (lincRNA) 1008 46.23016 1
Osa11LNT0102500.2 11 Osa11LNG0102500 19911133-19913302 intergenetic lncRNA (lincRNA) 893 45.0168 3
Osa11LNT0102500.1 11 Osa11LNG0102500 19911133-19913302 intergenetic lncRNA (lincRNA) 941 44.20829 3
Osa11LNT0102700.3 11 Osa11LNG0102700 19971044-19983466 sense lncRNA 4462 45.24877 19
Osa11LNT0102700.2 11 Osa11LNG0102700 19971044-19983466 sense lncRNA 3557 47.56818 21
Osa11LNT0102700.1 11 Osa11LNG0102700 19971044-19983466 sense lncRNA 3551 47.70487 21
Osa11LNT0082300.1 11 Osa11LNG0082300 199761-203743 long non-coding(lnc) isoforms of known genes 2489 49.21655 7
Osa11LNT0102800.1 11 Osa11LNG0102800 19991997-19996917 long non-coding(lnc) isoforms of known genes 4589 42.18784 2
Osa11LNT0102900.1 11 Osa11LNG0102900 20030056-20034630 long non-coding(lnc) isoforms of known genes 1975 50.73418 9
Osa11LNT0103000.1 11 Osa11LNG0103000 20045078-20048940 long non-coding(lnc) isoforms of known genes 1202 45.75707 7
Osa11LNT0103200.1 11 Osa11LNG0103200 20098138-20106787 long non-coding(lnc) isoforms of known genes 1167 45.32991 12
Osa11LNT0103100.1 11 Osa11LNG0103100 20109599-20116019 long non-coding(lnc) isoforms of known genes 2430 49.67078 14
Osa11LNT0103100.2 11 Osa11LNG0103100 20109599-20116019 long non-coding(lnc) isoforms of known genes 2435 49.69199 14
Osa11LNT0085700.1 11 Osa11LNG0085700 2015298-2018115 long non-coding(lnc) isoforms of known genes 1313 54.30312 4
Osa11LNT0103300.1 11 Osa11LNG0103300 20182477-20187059 long non-coding(lnc) isoforms of known genes 1982 51.36226 2
Osa11LNT0103400.1 11 Osa11LNG0103400 20278394-20281173 sense lncRNA 1848 35.7684 3
Osa11LNT0103500.1 11 Osa11LNG0103500 20315329-20317394 long non-coding(lnc) isoforms of known genes 854 57.02576 6
Osa11LNT0103600.2 11 Osa11LNG0103600 20369180-20372223 long non-coding(lnc) isoforms of known genes 1680 48.33333 8
Osa11LNT0103600.1 11 Osa11LNG0103600 20369180-20372223 long non-coding(lnc) isoforms of known genes 1399 51.10793 9
Osa11LNT0103700.2 11 Osa11LNG0103700 20390259-20392211 long non-coding(lnc) isoforms of known genes 1737 61.94588 2
Osa11LNT0103700.1 11 Osa11LNG0103700 20390259-20392211 long non-coding(lnc) isoforms of known genes 1794 61.03679 2
Osa11LNT0103800.1 11 Osa11LNG0103800 20415216-20419183 long non-coding(lnc) isoforms of known genes 1883 47.68986 12
Osa11LNT0103900.1 11 Osa11LNG0103900 20420039-20423550 long non-coding(lnc) isoforms of known genes 1067 48.07873 9
Osa11LNT0104000.1 11 Osa11LNG0104000 20482703-20488020 long non-coding(lnc) isoforms of known genes 1489 48.82471 8
Osa11LNT0104100.1 11 Osa11LNG0104100 20533192-20535516 long non-coding(lnc) isoforms of known genes 1904 42.4895 6
Osa11LNT0104200.1 11 Osa11LNG0104200 20572147-20577380 long non-coding(lnc) isoforms of known genes 2227 52.67176 14
Osa11LNT0085800.1 11 Osa11LNG0085800 2059565-2063380 long non-coding(lnc) isoforms of known genes 2654 56.02864 8
Osa11LNT0085900.2 11 Osa11LNG0085900 2063999-2066533 sense lncRNA 1356 56.12094 3
Osa11LNT0085900.1 11 Osa11LNG0085900 2063999-2066533 sense lncRNA 1281 57.45511 2
Osa11LNT0541700.1 11 Osa11LNG0541700 20864353-20864597 intergenetic lncRNA (lincRNA) 245 28.57143 1
Osa11LNT0541800.1 11 Osa11LNG0541800 20864353-20864597 intergenetic lncRNA (lincRNA) 245 28.57143 1
Osa11LNT0542000.1 11 Osa11LNG0542000 20864664-20864936 intergenetic lncRNA (lincRNA) 273 26.37363 1
Osa11LNT0541900.1 11 Osa11LNG0541900 20864664-20864936 intergenetic lncRNA (lincRNA) 273 26.37363 1
Osa11LNT0542100.1 11 Osa11LNG0542100 20865148-20865381 intergenetic lncRNA (lincRNA) 234 41.88034 1
Osa11LNT0086000.1 11 Osa11LNG0086000 2087123-2094502 long non-coding(lnc) isoforms of known genes 1985 46.85139 13
Osa11LNT0086100.1 11 Osa11LNG0086100 2089899-2090120 intergenetic lncRNA (lincRNA) 222 62.61261 1
Osa11LNT0104300.2 11 Osa11LNG0104300 21050994-21056185 long non-coding(lnc) isoforms of known genes 1478 46.88769 7