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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs

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Transcript id Chrom Gene Location Classification Length GC Content(%) Exon Number
Osa01LNT0056200.1 1 Osa01LNG0056200 41781275-41788531 long non-coding(lnc) isoforms of known genes 1916 47.96451 9
Osa01LNT0056300.1 1 Osa01LNG0056300 41822398-41825087 long non-coding(lnc) isoforms of known genes 1198 42.7379 7
Osa01LNT0056400.1 1 Osa01LNG0056400 41864771-41866546 long non-coding(lnc) isoforms of known genes 1341 48.54586 4
Osa01LNT0056500.2 1 Osa01LNG0056500 41874009-41880597 long non-coding(lnc) isoforms of known genes 2549 50.76501 18
Osa01LNT0056500.1 1 Osa01LNG0056500 41874009-41880597 long non-coding(lnc) isoforms of known genes 2545 50.72692 18
Osa01LNT0056600.1 1 Osa01LNG0056600 41925788-41932875 long non-coding(lnc) isoforms of known genes 3754 48.02877 9
Osa01LNT0056700.1 1 Osa01LNG0056700 42000420-42002929 long non-coding(lnc) isoforms of known genes 2416 53.51821 2
Osa01LNT0056800.1 1 Osa01LNG0056800 42037177-42039691 long non-coding(lnc) isoforms of known genes 2428 57.86656 2
Osa01LNT0056900.1 1 Osa01LNG0056900 42135598-42135947 intergenetic lncRNA (lincRNA) 350 66.0 1
Osa01LNT0005700.1 1 Osa01LNG0005700 4215038-4217365 long non-coding(lnc) isoforms of known genes 1748 61.0984 3
Osa01LNT0057000.1 1 Osa01LNG0057000 42234599-42237446 long non-coding(lnc) isoforms of known genes 1307 51.87452 11
Osa01LNT0057100.1 1 Osa01LNG0057100 42265023-42268466 long non-coding(lnc) isoforms of known genes 1258 47.45628 14
Osa01LNT0057200.1 1 Osa01LNG0057200 42303492-42311211 long non-coding(lnc) isoforms of known genes 2302 45.43875 21
Osa01LNT0057300.3 1 Osa01LNG0057300 42336297-42349571 long non-coding(lnc) isoforms of known genes 5314 41.70117 22
Osa01LNT0057300.2 1 Osa01LNG0057300 42336297-42349571 long non-coding(lnc) isoforms of known genes 5590 41.37746 20
Osa01LNT0057300.1 1 Osa01LNG0057300 42336297-42349571 long non-coding(lnc) isoforms of known genes 5516 41.47933 21
Osa01LNT0057400.1 1 Osa01LNG0057400 42413471-42416572 long non-coding(lnc) isoforms of known genes 1272 47.09119 6
Osa01LNT0057500.1 1 Osa01LNG0057500 42695637-42699039 long non-coding(lnc) isoforms of known genes 2013 56.58222 6
Osa01LNT0057600.1 1 Osa01LNG0057600 42752981-42757184 long non-coding(lnc) isoforms of known genes 1935 45.11628 10
Osa01LNT0057700.1 1 Osa01LNG0057700 42774999-42778601 long non-coding(lnc) isoforms of known genes 996 44.37751 7
Osa01LNT0462400.1 1 Osa01LNG0462400 42783230-42783450 intergenetic lncRNA (lincRNA) 221 38.00905 1
Osa01LNT0462500.1 1 Osa01LNG0462500 42783230-42783450 intergenetic lncRNA (lincRNA) 221 38.00905 1
Osa01LNT0005800.1 1 Osa01LNG0005800 4281663-4283655 long non-coding(lnc) isoforms of known genes 469 47.76119 2
Osa01LNT0057800.1 1 Osa01LNG0057800 42826262-42828667 long non-coding(lnc) isoforms of known genes 1138 55.6239 8
Osa01LNT0057900.1 1 Osa01LNG0057900 42870535-42872637 long non-coding(lnc) isoforms of known genes 1244 54.18006 5
Osa01LNT0058100.1 1 Osa01LNG0058100 42923736-42923973 intergenetic lncRNA (lincRNA) 238 42.01681 1
Osa01LNT0058000.1 1 Osa01LNG0058000 42923736-42923973 intergenetic lncRNA (lincRNA) 238 42.01681 1
Osa01LNT0462600.1 1 Osa01LNG0462600 42925217-42925421 intergenetic lncRNA (lincRNA) 205 23.41463 1
Osa01LNT0462700.1 1 Osa01LNG0462700 43004631-43004832 intergenetic lncRNA (lincRNA) 202 46.53465 1
Osa01LNT0058200.2 1 Osa01LNG0058200 43049162-43058976 long non-coding(lnc) isoforms of known genes 4485 43.92419 17
Osa01LNT0058200.1 1 Osa01LNG0058200 43049162-43058976 long non-coding(lnc) isoforms of known genes 4395 43.89078 18
Osa01LNT0058300.1 1 Osa01LNG0058300 43120167-43134502 long non-coding(lnc) isoforms of known genes 7637 45.93427 25
Osa01LNT0058400.1 1 Osa01LNG0058400 43205700-43215244 long non-coding(lnc) isoforms of known genes 4469 40.56836 10
Osa01LNT0058500.1 1 Osa01LNG0058500 43242321-43243259 intergenetic lncRNA (lincRNA) 939 60.0639 1
Osa01LNT0058600.1 1 Osa01LNG0058600 43248497-43249469 sense lncRNA 781 53.64917 2
Osa01LNT0005900.1 1 Osa01LNG0005900 4329461-4338444 long non-coding(lnc) isoforms of known genes 4417 46.38895 14
Osa01LNT0005900.2 1 Osa01LNG0005900 4329461-4338444 long non-coding(lnc) isoforms of known genes 4208 46.60171 15
Osa01LNT0000200.1 1 Osa01LNG0000200 436154-437296 intergenetic lncRNA (lincRNA) 1143 49.34383 1
Osa01LNT0006000.1 1 Osa01LNG0006000 4423907-4426863 long non-coding(lnc) isoforms of known genes 1079 45.69045 5
Osa01LNT0006100.1 1 Osa01LNG0006100 4459088-4484508 intergenetic lncRNA (lincRNA) 2797 46.2281 15
Osa01LNT0006100.2 1 Osa01LNG0006100 4459088-4484508 long non-coding(lnc) isoforms of known genes 4512 47.11879 24
Osa01LNT0006200.1 1 Osa01LNG0006200 4581256-4584537 long non-coding(lnc) isoforms of known genes 1629 55.06446 6
Osa01LNT0006300.1 1 Osa01LNG0006300 4712105-4713825 intergenetic lncRNA (lincRNA) 511 55.3816 2
Osa01LNT0006400.1 1 Osa01LNG0006400 4731780-4737606 long non-coding(lnc) isoforms of known genes 4121 45.23174 6
Osa01LNT0006400.2 1 Osa01LNG0006400 4731780-4737606 long non-coding(lnc) isoforms of known genes 4001 45.48863 7
Osa01LNT0006600.1 1 Osa01LNG0006600 4741811-4742499 long non-coding(lnc) isoforms of known genes 515 44.85437 3
Osa01LNT0006500.1 1 Osa01LNG0006500 4761327-4767478 long non-coding(lnc) isoforms of known genes 1464 47.47268 9
Osa01LNT0006700.1 1 Osa01LNG0006700 4879909-4885839 long non-coding(lnc) isoforms of known genes 1783 54.96354 6
Osa01LNT0006800.1 1 Osa01LNG0006800 5103265-5108946 intergenetic lncRNA (lincRNA) 1257 43.91408 2
Osa01LNT0006800.2 1 Osa01LNG0006800 5103265-5108946 intergenetic lncRNA (lincRNA) 859 50.29104 3