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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs

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Transcript id Chrom Gene Location Classification Length GC Content(%) Exon Number
Osa11LNT0104300.1 11 Osa11LNG0104300 21050994-21056185 long non-coding(lnc) isoforms of known genes 1517 46.73698 7
Osa11LNT0104300.3 11 Osa11LNG0104300 21050994-21056185 long non-coding(lnc) isoforms of known genes 1483 46.93189 7
Osa11LNT0542300.1 11 Osa11LNG0542300 21173330-21173574 intergenetic lncRNA (lincRNA) 245 27.34694 1
Osa11LNT0542200.1 11 Osa11LNG0542200 21173330-21173574 intergenetic lncRNA (lincRNA) 245 27.34694 1
Osa11LNT0104400.1 11 Osa11LNG0104400 21250919-21255628 long non-coding(lnc) isoforms of known genes 1627 45.66687 3
Osa11LNT0104500.1 11 Osa11LNG0104500 21284884-21289548 long non-coding(lnc) isoforms of known genes 3880 43.53093 4
Osa11LNT0086300.1 11 Osa11LNG0086300 2131922-2141236 long non-coding(lnc) isoforms of known genes 2594 44.71858 23
Osa11LNT0542400.1 11 Osa11LNG0542400 21397985-21398229 intergenetic lncRNA (lincRNA) 245 26.53061 1
Osa11LNT0542500.1 11 Osa11LNG0542500 21398296-21398572 intergenetic lncRNA (lincRNA) 277 25.27076 1
Osa11LNT0542600.1 11 Osa11LNG0542600 21398296-21398572 intergenetic lncRNA (lincRNA) 277 25.27076 1
Osa11LNT0104600.1 11 Osa11LNG0104600 21480230-21485098 long non-coding(lnc) isoforms of known genes 1651 46.75954 9
Osa11LNT0086200.1 11 Osa11LNG0086200 2148786-2151553 long non-coding(lnc) isoforms of known genes 1728 42.30324 2
Osa11LNT0104800.2 11 Osa11LNG0104800 21500589-21516452 long non-coding(lnc) isoforms of known genes 4254 44.61683 32
Osa11LNT0104800.1 11 Osa11LNG0104800 21500589-21516452 long non-coding(lnc) isoforms of known genes 4132 44.48209 32
Osa11LNT0104700.1 11 Osa11LNG0104700 21587645-21590254 intergenetic lncRNA (lincRNA) 2040 40.83333 3
Osa11LNT0542700.1 11 Osa11LNG0542700 21667981-21668258 intergenetic lncRNA (lincRNA) 278 29.85612 1
Osa11LNT0542800.1 11 Osa11LNG0542800 21697129-21697373 intergenetic lncRNA (lincRNA) 245 26.93878 1
Osa11LNT0542900.1 11 Osa11LNG0542900 21697129-21697373 intergenetic lncRNA (lincRNA) 245 26.93878 1
Osa11LNT0543100.1 11 Osa11LNG0543100 21697440-21697714 intergenetic lncRNA (lincRNA) 275 24.0 1
Osa11LNT0543000.1 11 Osa11LNG0543000 21697440-21697714 intergenetic lncRNA (lincRNA) 275 24.0 1
Osa11LNT0543200.1 11 Osa11LNG0543200 21697926-21698157 intergenetic lncRNA (lincRNA) 232 40.51724 1
Osa11LNT0543300.1 11 Osa11LNG0543300 21767184-21767403 intergenetic lncRNA (lincRNA) 220 26.36364 1
Osa11LNT0104900.1 11 Osa11LNG0104900 21883428-21888726 long non-coding(lnc) isoforms of known genes 1630 59.6319 3
Osa11LNT0086400.1 11 Osa11LNG0086400 2218536-2220710 long non-coding(lnc) isoforms of known genes 963 65.00519 2
Osa11LNT0105000.1 11 Osa11LNG0105000 22200584-22203006 intergenetic lncRNA (lincRNA) 1543 44.52366 5
Osa11LNT0105200.1 11 Osa11LNG0105200 22267505-22271370 long non-coding(lnc) isoforms of known genes 2244 43.62745 10
Osa11LNT0105300.1 11 Osa11LNG0105300 22268730-22271209 long non-coding(lnc) isoforms of known genes 2318 42.49353 3
Osa11LNT0105100.1 11 Osa11LNG0105100 22272891-22281786 long non-coding(lnc) isoforms of known genes 4271 43.19831 19
Osa11LNT0543400.1 11 Osa11LNG0543400 22415592-22415801 intergenetic lncRNA (lincRNA) 210 40.47619 1
Osa11LNT0105400.1 11 Osa11LNG0105400 22439360-22445813 sense lncRNA 433 46.88222 2
Osa11LNT0105500.1 11 Osa11LNG0105500 22449578-22451319 intergenetic lncRNA (lincRNA) 282 47.51773 2
Osa11LNT0086500.1 11 Osa11LNG0086500 2247726-2256211 long non-coding(lnc) isoforms of known genes 6574 47.14025 10
Osa11LNT0105600.1 11 Osa11LNG0105600 22514191-22518062 long non-coding(lnc) isoforms of known genes 1791 46.06365 7
Osa11LNT0105700.1 11 Osa11LNG0105700 22523670-22529610 long non-coding(lnc) isoforms of known genes 2668 52.88606 9
Osa11LNT0086600.1 11 Osa11LNG0086600 2257210-2261394 long non-coding(lnc) isoforms of known genes 2983 45.55816 5
Osa11LNT0086600.2 11 Osa11LNG0086600 2257210-2261394 long non-coding(lnc) isoforms of known genes 1808 50.16593 6
Osa11LNT0105800.1 11 Osa11LNG0105800 22645464-22647342 sense lncRNA 1708 54.03981 2
Osa11LNT0105900.1 11 Osa11LNG0105900 22792018-22792363 intergenetic lncRNA (lincRNA) 346 44.21965 1
Osa11LNT0106000.1 11 Osa11LNG0106000 23225234-23226910 long non-coding(lnc) isoforms of known genes 1010 52.37624 3
Osa11LNT0106100.1 11 Osa11LNG0106100 23342381-23343067 intergenetic lncRNA (lincRNA) 687 42.35808 1
Osa11LNT0106200.1 11 Osa11LNG0106200 23375120-23375987 Antisense lncRNA 497 64.18511 2
Osa11LNT0106300.1 11 Osa11LNG0106300 23553209-23558619 long non-coding(lnc) isoforms of known genes 1249 43.63491 7
Osa11LNT0543500.1 11 Osa11LNG0543500 23562093-23562346 intergenetic lncRNA (lincRNA) 254 26.77165 1
Osa11LNT0086700.1 11 Osa11LNG0086700 2363882-2369635 sense lncRNA 494 61.53846 2
Osa11LNT0106400.1 11 Osa11LNG0106400 23661546-23664532 long non-coding(lnc) isoforms of known genes 1472 43.20652 5
Osa11LNT0106500.1 11 Osa11LNG0106500 23930753-23932107 intergenetic lncRNA (lincRNA) 1355 52.10332 1
Osa11LNT0106600.1 11 Osa11LNG0106600 24071432-24071879 intergenetic lncRNA (lincRNA) 448 42.85714 1
Osa11LNT0106700.1 11 Osa11LNG0106700 24071931-24076332 intergenetic lncRNA (lincRNA) 1510 45.23179 5
Osa11LNT0106800.1 11 Osa11LNG0106800 24077702-24082156 long non-coding(lnc) isoforms of known genes 3648 45.39474 3
Osa11LNT0106900.1 11 Osa11LNG0106900 24083767-24087622 long non-coding(lnc) isoforms of known genes 1851 45.48892 4
Osa11LNT0107000.1 11 Osa11LNG0107000 24096003-24100539 long non-coding(lnc) isoforms of known genes 3250 44.70769 4
Osa11LNT0107000.2 11 Osa11LNG0107000 24096003-24100539 long non-coding(lnc) isoforms of known genes 3460 44.24855 3
Osa11LNT0107100.2 11 Osa11LNG0107100 24118821-24120364 Antisense lncRNA 492 52.43902 2
Osa11LNT0107100.1 11 Osa11LNG0107100 24118821-24120364 Antisense lncRNA 232 61.63793 2
Osa11LNT0107200.1 11 Osa11LNG0107200 24170773-24172973 long non-coding(lnc) isoforms of known genes 1240 47.41935 8
Osa11LNT0086800.1 11 Osa11LNG0086800 2418418-2423378 long non-coding(lnc) isoforms of known genes 2813 47.60043 10
Osa11LNT0107300.1 11 Osa11LNG0107300 24338961-24340880 intergenetic lncRNA (lincRNA) 1144 39.07343 2
Osa11LNT0107400.1 11 Osa11LNG0107400 24504576-24507416 Antisense lncRNA 547 41.49909 2
Osa11LNT0107500.1 11 Osa11LNG0107500 24506975-24507416 intergenetic lncRNA (lincRNA) 442 36.42534 1
Osa11LNT0086900.1 11 Osa11LNG0086900 2457760-2460823 long non-coding(lnc) isoforms of known genes 896 45.87054 4
Osa11LNT0543600.1 11 Osa11LNG0543600 24588897-24589141 intergenetic lncRNA (lincRNA) 245 38.77551 1
Osa11LNT0543700.1 11 Osa11LNG0543700 24614091-24614338 intergenetic lncRNA (lincRNA) 248 26.20968 1
Osa11LNT0107600.1 11 Osa11LNG0107600 24733779-24734887 sense lncRNA 814 54.1769 2
Osa11LNT0543800.1 11 Osa11LNG0543800 24821258-24821532 intergenetic lncRNA (lincRNA) 275 25.45455 1
Osa11LNT0543900.1 11 Osa11LNG0543900 24821258-24821532 intergenetic lncRNA (lincRNA) 275 25.45455 1
Osa11LNT0107800.1 11 Osa11LNG0107800 24847426-24853969 long non-coding(lnc) isoforms of known genes 1090 42.01835 3
Osa11LNT0107900.1 11 Osa11LNG0107900 24849968-24850212 intronic lncRNA 245 23.67347 1
Osa11LNT0108000.1 11 Osa11LNG0108000 24850279-24850552 intronic lncRNA 274 27.37226 1
Osa11LNT0108100.1 11 Osa11LNG0108100 24850279-24850552 intronic lncRNA 274 27.37226 1
Osa11LNT0107700.1 11 Osa11LNG0107700 24892469-24893615 intergenetic lncRNA (lincRNA) 992 46.77419 2
Osa11LNT0108200.1 11 Osa11LNG0108200 24906590-24909148 intergenetic lncRNA (lincRNA) 907 41.01433 2
Osa11LNT0108300.1 11 Osa11LNG0108300 24959561-24960185 intergenetic lncRNA (lincRNA) 625 38.24 1
Osa11LNT0108400.2 11 Osa11LNG0108400 25148742-25153451 long non-coding(lnc) isoforms of known genes 2785 48.1149 10
Osa11LNT0108400.1 11 Osa11LNG0108400 25148742-25153451 long non-coding(lnc) isoforms of known genes 3028 46.89564 9
Osa11LNT0544000.1 11 Osa11LNG0544000 25299716-25299960 intergenetic lncRNA (lincRNA) 245 46.12245 1
Osa11LNT0544100.1 11 Osa11LNG0544100 25391205-25391437 intergenetic lncRNA (lincRNA) 233 40.77253 1
Osa11LNT0544200.1 11 Osa11LNG0544200 25470337-25470540 intergenetic lncRNA (lincRNA) 204 26.47059 1
Osa11LNT0544300.1 11 Osa11LNG0544300 25586527-25586732 intergenetic lncRNA (lincRNA) 206 44.66019 1
Osa11LNT0082400.1 11 Osa11LNG0082400 256918-262382 long non-coding(lnc) isoforms of known genes 3439 47.28119 10
Osa11LNT0108500.1 11 Osa11LNG0108500 25775838-25779956 long non-coding(lnc) isoforms of known genes 2900 45.37931 12
Osa11LNT0108500.2 11 Osa11LNG0108500 25775838-25779956 long non-coding(lnc) isoforms of known genes 2881 45.43561 12
Osa11LNT0108600.1 11 Osa11LNG0108600 25806239-25810387 long non-coding(lnc) isoforms of known genes 1436 41.92201 8
Osa11LNT0544400.1 11 Osa11LNG0544400 25874873-25875136 intergenetic lncRNA (lincRNA) 264 26.13636 1
Osa11LNT0544500.1 11 Osa11LNG0544500 25874873-25875136 intergenetic lncRNA (lincRNA) 264 26.13636 1
Osa11LNT0108700.1 11 Osa11LNG0108700 25966635-25968183 intergenetic lncRNA (lincRNA) 554 41.51625 3
Osa11LNT0087000.1 11 Osa11LNG0087000 2605752-2614119 long non-coding(lnc) isoforms of known genes 5176 42.69706 13
Osa11LNT0108800.1 11 Osa11LNG0108800 26233585-26234264 intergenetic lncRNA (lincRNA) 680 71.32353 1
Osa11LNT0082500.2 11 Osa11LNG0082500 262623-264493 long non-coding(lnc) isoforms of known genes 1047 47.56447 5
Osa11LNT0082500.1 11 Osa11LNG0082500 262623-264493 long non-coding(lnc) isoforms of known genes 1491 46.00939 4
Osa11LNT0108900.1 11 Osa11LNG0108900 26276499-26279705 long non-coding(lnc) isoforms of known genes 2181 45.52957 3
Osa11LNT0109000.1 11 Osa11LNG0109000 26310875-26312789 long non-coding(lnc) isoforms of known genes 1015 51.52709 4
Osa11LNT0109100.1 11 Osa11LNG0109100 26317492-26318016 Antisense lncRNA 237 59.49367 3
Osa11LNT0544600.1 11 Osa11LNG0544600 26444941-26445160 intergenetic lncRNA (lincRNA) 220 45.0 1
Osa11LNT0109200.1 11 Osa11LNG0109200 26468486-26473246 long non-coding(lnc) isoforms of known genes 1802 47.78024 7
Osa11LNT0544700.1 11 Osa11LNG0544700 26486453-26486727 intergenetic lncRNA (lincRNA) 275 26.18182 1
Osa11LNT0109300.1 11 Osa11LNG0109300 26524975-26530974 long non-coding(lnc) isoforms of known genes 5204 44.63874 2
Osa11LNT0109400.1 11 Osa11LNG0109400 26533899-26537138 long non-coding(lnc) isoforms of known genes 2487 42.17933 4
Osa11LNT0109500.1 11 Osa11LNG0109500 26952894-26960501 sense lncRNA 3172 45.30265 2
Osa11LNT0544900.1 11 Osa11LNG0544900 27034288-27034543 intergenetic lncRNA (lincRNA) 256 29.29688 1
Osa11LNT0544800.1 11 Osa11LNG0544800 27034288-27034543 intergenetic lncRNA (lincRNA) 256 29.29688 1