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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs

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Transcript id Chrom Gene Location Classification Length GC Content(%) Exon Number
Osa01LNT0006900.2 1 Osa01LNG0006900 5109105-5109784 Antisense lncRNA 751 49.26764 2
Osa01LNT0006900.1 1 Osa01LNG0006900 5109105-5109784 intergenetic lncRNA (lincRNA) 606 45.0495 2
Osa01LNT0007000.2 1 Osa01LNG0007000 5109949-5117460 long non-coding(lnc) isoforms of known genes 4866 48.64365 15
Osa01LNT0007000.1 1 Osa01LNG0007000 5109949-5117460 long non-coding(lnc) isoforms of known genes 4792 48.91486 16
Osa01LNT0000300.1 1 Osa01LNG0000300 513890-523417 long non-coding(lnc) isoforms of known genes 5191 46.31092 23
Osa01LNT0007100.1 1 Osa01LNG0007100 5203739-5213371 Antisense lncRNA 709 55.43018 5
Osa01LNT0007200.2 1 Osa01LNG0007200 5263417-5266158 long non-coding(lnc) isoforms of known genes 1186 53.11973 6
Osa01LNT0007200.1 1 Osa01LNG0007200 5263417-5266158 long non-coding(lnc) isoforms of known genes 1576 48.73096 5
Osa01LNT0007300.1 1 Osa01LNG0007300 5307415-5324239 long non-coding(lnc) isoforms of known genes 3774 45.04505 20
Osa01LNT0007400.1 1 Osa01LNG0007400 5389841-5394388 long non-coding(lnc) isoforms of known genes 1691 53.81431 6
Osa01LNT0007400.2 1 Osa01LNG0007400 5389841-5394388 long non-coding(lnc) isoforms of known genes 1585 54.44795 7
Osa01LNT0007500.1 1 Osa01LNG0007500 5414252-5415184 long non-coding(lnc) isoforms of known genes 853 36.69402 2
Osa01LNT0007600.1 1 Osa01LNG0007600 5510585-5514490 long non-coding(lnc) isoforms of known genes 2526 47.66429 4
Osa01LNT0000400.1 1 Osa01LNG0000400 554350-555286 long non-coding(lnc) isoforms of known genes 861 40.99884 2
Osa01LNT0007800.2 1 Osa01LNG0007800 5559733-5568844 long non-coding(lnc) isoforms of known genes 1255 51.0757 10
Osa01LNT0007800.1 1 Osa01LNG0007800 5559733-5568844 long non-coding(lnc) isoforms of known genes 1258 51.03339 10
Osa01LNT0007700.1 1 Osa01LNG0007700 5579129-5585078 long non-coding(lnc) isoforms of known genes 2285 50.2407 3
Osa01LNT0007900.2 1 Osa01LNG0007900 5591009-5599226 long non-coding(lnc) isoforms of known genes 5350 49.98131 4
Osa01LNT0007900.1 1 Osa01LNG0007900 5591009-5599226 long non-coding(lnc) isoforms of known genes 4147 54.32843 8
Osa01LNT0008000.1 1 Osa01LNG0008000 5675850-5679543 long non-coding(lnc) isoforms of known genes 1344 51.19048 6
Osa01LNT0008100.2 1 Osa01LNG0008100 5774293-5778491 long non-coding(lnc) isoforms of known genes 1868 51.55246 12
Osa01LNT0008100.1 1 Osa01LNG0008100 5774293-5778491 long non-coding(lnc) isoforms of known genes 1859 51.47929 12
Osa01LNT0008200.2 1 Osa01LNG0008200 5814834-5819196 long non-coding(lnc) isoforms of known genes 2723 53.17664 12
Osa01LNT0008200.1 1 Osa01LNG0008200 5814834-5819196 long non-coding(lnc) isoforms of known genes 2750 52.94545 12
Osa01LNT0008400.1 1 Osa01LNG0008400 6017042-6023688 long non-coding(lnc) isoforms of known genes 1163 48.49527 6
Osa01LNT0008300.1 1 Osa01LNG0008300 6094656-6096509 long non-coding(lnc) isoforms of known genes 1508 61.67109 4
Osa01LNT0008500.1 1 Osa01LNG0008500 6139190-6141952 long non-coding(lnc) isoforms of known genes 2180 54.08257 4
Osa01LNT0008600.1 1 Osa01LNG0008600 6242516-6244879 long non-coding(lnc) isoforms of known genes 1098 54.18944 4
Osa01LNT0000500.1 1 Osa01LNG0000500 640698-644217 long non-coding(lnc) isoforms of known genes 1448 49.10221 12
Osa01LNT0008700.1 1 Osa01LNG0008700 6455014-6455219 intronic lncRNA 206 26.21359 1
Osa01LNT0008800.1 1 Osa01LNG0008800 6500709-6507086 long non-coding(lnc) isoforms of known genes 3212 44.55168 9
Osa01LNT0008900.1 1 Osa01LNG0008900 6518152-6521026 long non-coding(lnc) isoforms of known genes 1934 54.80869 8
Osa01LNT0009000.1 1 Osa01LNG0009000 6557226-6557904 intergenetic lncRNA (lincRNA) 679 35.78792 1
Osa01LNT0009100.3 1 Osa01LNG0009100 6572140-6577148 long non-coding(lnc) isoforms of known genes 1608 47.07711 9
Osa01LNT0009100.2 1 Osa01LNG0009100 6572140-6577148 long non-coding(lnc) isoforms of known genes 2146 43.61603 9
Osa01LNT0009100.1 1 Osa01LNG0009100 6572140-6577148 long non-coding(lnc) isoforms of known genes 1647 47.966 9
Osa01LNT0009200.1 1 Osa01LNG0009200 6655876-6663178 Antisense lncRNA 1369 42.95106 4
Osa01LNT0009300.1 1 Osa01LNG0009300 6704187-6710552 long non-coding(lnc) isoforms of known genes 2896 49.13674 5
Osa01LNT0009400.2 1 Osa01LNG0009400 6738245-6763927 intergenetic lncRNA (lincRNA) 3545 49.87306 14
Osa01LNT0009400.1 1 Osa01LNG0009400 6738245-6763927 intergenetic lncRNA (lincRNA) 3791 48.95806 13
Osa01LNT0009400.3 1 Osa01LNG0009400 6738245-6763927 intergenetic lncRNA (lincRNA) 3342 50.35907 16
Osa01LNT0009400.4 1 Osa01LNG0009400 6738245-6763927 intergenetic lncRNA (lincRNA) 1865 46.86327 10
Osa01LNT0009500.1 1 Osa01LNG0009500 6764128-6765888 long non-coding(lnc) isoforms of known genes 1094 61.60878 3
Osa01LNT0009600.1 1 Osa01LNG0009600 6909800-6911947 long non-coding(lnc) isoforms of known genes 1083 57.52539 5
Osa01LNT0009700.1 1 Osa01LNG0009700 7095864-7098675 long non-coding(lnc) isoforms of known genes 1525 57.44262 4
Osa01LNT0009800.1 1 Osa01LNG0009800 7400923-7401126 intronic lncRNA 204 27.45098 1
Osa01LNT0009900.1 1 Osa01LNG0009900 7404911-7409638 long non-coding(lnc) isoforms of known genes 2302 44.26586 7
Osa01LNT0000600.1 1 Osa01LNG0000600 742860-745672 long non-coding(lnc) isoforms of known genes 2261 45.51084 5
Osa01LNT0010000.1 1 Osa01LNG0010000 7438897-7443214 long non-coding(lnc) isoforms of known genes 2060 43.39806 5
Osa01LNT0010100.1 1 Osa01LNG0010100 7472833-7476550 long non-coding(lnc) isoforms of known genes 2577 42.14203 4