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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs

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Transcript id Chrom Gene Location Classification Length GC Content(%) Exon Number
Osa11LNT0109600.1 11 Osa11LNG0109600 27100235-27100436 intronic lncRNA 202 41.58416 1
Osa11LNT0109700.1 11 Osa11LNG0109700 27116781-27117678 sense lncRNA 641 51.17005 2
Osa11LNT0109900.1 11 Osa11LNG0109900 27157719-27165386 long non-coding(lnc) isoforms of known genes 4580 43.93013 19
Osa11LNT0109800.1 11 Osa11LNG0109800 27194016-27199970 long non-coding(lnc) isoforms of known genes 2359 55.5744 4
Osa11LNT0110000.1 11 Osa11LNG0110000 27313758-27316987 intergenetic lncRNA (lincRNA) 1348 48.5905 3
Osa11LNT0110100.1 11 Osa11LNG0110100 27383694-27386883 long non-coding(lnc) isoforms of known genes 1908 43.39623 7
Osa11LNT0110300.1 11 Osa11LNG0110300 27492119-27498089 long non-coding(lnc) isoforms of known genes 4425 47.41243 6
Osa11LNT0110200.1 11 Osa11LNG0110200 27498933-27499573 intergenetic lncRNA (lincRNA) 641 44.61778 1
Osa11LNT0110400.1 11 Osa11LNG0110400 27670368-27673334 long non-coding(lnc) isoforms of known genes 2348 43.18569 2
Osa11LNT0110800.2 11 Osa11LNG0110800 27723961-27724354 sense lncRNA 271 52.76753 2
Osa11LNT0110800.1 11 Osa11LNG0110800 27723961-27724354 sense lncRNA 268 52.61194 2
Osa11LNT0545000.1 11 Osa11LNG0545000 27752211-27752436 intergenetic lncRNA (lincRNA) 226 49.55752 1
Osa11LNT0110500.1 11 Osa11LNG0110500 27752564-27753827 intergenetic lncRNA (lincRNA) 1264 43.82911 1
Osa11LNT0110600.1 11 Osa11LNG0110600 27779856-27782154 intergenetic lncRNA (lincRNA) 2299 40.97434 1
Osa11LNT0110700.1 11 Osa11LNG0110700 27784700-27793195 long non-coding(lnc) isoforms of known genes 4381 45.74298 6
Osa11LNT0545100.1 11 Osa11LNG0545100 27950765-27951032 intergenetic lncRNA (lincRNA) 268 27.23881 1
Osa11LNT0545200.1 11 Osa11LNG0545200 27950765-27951032 intergenetic lncRNA (lincRNA) 268 27.23881 1
Osa11LNT0545300.1 11 Osa11LNG0545300 27958670-27958875 intergenetic lncRNA (lincRNA) 206 26.21359 1
Osa11LNT0545400.1 11 Osa11LNG0545400 28029988-28030262 intergenetic lncRNA (lincRNA) 275 26.54545 1
Osa11LNT0545500.1 11 Osa11LNG0545500 28029988-28030262 intergenetic lncRNA (lincRNA) 275 26.54545 1
Osa11LNT0110900.1 11 Osa11LNG0110900 28031067-28032967 intergenetic lncRNA (lincRNA) 1698 46.58422 2
Osa11LNT0110900.2 11 Osa11LNG0110900 28031067-28032967 intergenetic lncRNA (lincRNA) 982 54.07332 3
Osa11LNT0110900.3 11 Osa11LNG0110900 28031067-28032967 intergenetic lncRNA (lincRNA) 838 57.63723 2
Osa11LNT0545600.1 11 Osa11LNG0545600 28265795-28266039 intergenetic lncRNA (lincRNA) 245 26.93878 1
Osa11LNT0545700.1 11 Osa11LNG0545700 28266106-28266380 intergenetic lncRNA (lincRNA) 275 24.72727 1
Osa11LNT0111000.1 11 Osa11LNG0111000 28335198-28338717 long non-coding(lnc) isoforms of known genes 1710 48.83041 10
Osa11LNT0111100.1 11 Osa11LNG0111100 28428442-28430527 intergenetic lncRNA (lincRNA) 1945 36.70951 2
Osa11LNT0087200.1 11 Osa11LNG0087200 2844711-2844911 intergenetic lncRNA (lincRNA) 201 45.27363 1
Osa11LNT0111400.2 11 Osa11LNG0111400 28512539-28514189 Antisense lncRNA 408 50.98039 4
Osa11LNT0111400.1 11 Osa11LNG0111400 28512539-28514189 Antisense lncRNA 401 51.37157 4
Osa11LNT0087100.1 11 Osa11LNG0087100 2860823-2869005 long non-coding(lnc) isoforms of known genes 3823 42.68899 15
Osa11LNT0545800.1 11 Osa11LNG0545800 28679779-28679998 intergenetic lncRNA (lincRNA) 220 37.72727 1
Osa11LNT0545900.1 11 Osa11LNG0545900 28680551-28680795 intergenetic lncRNA (lincRNA) 245 26.53061 1
Osa11LNT0546000.1 11 Osa11LNG0546000 28683263-28683509 intergenetic lncRNA (lincRNA) 247 23.07692 1
Osa11LNT0111200.1 11 Osa11LNG0111200 28700686-28702667 intergenetic lncRNA (lincRNA) 507 46.15385 2
Osa11LNT0082600.2 11 Osa11LNG0082600 287032-293606 long non-coding(lnc) isoforms of known genes 4311 43.47019 8
Osa11LNT0082600.1 11 Osa11LNG0082600 287032-293606 long non-coding(lnc) isoforms of known genes 4551 42.78181 8
Osa11LNT0111300.1 11 Osa11LNG0111300 28703974-28705305 long non-coding(lnc) isoforms of known genes 1153 47.52819 3
Osa11LNT0111500.1 11 Osa11LNG0111500 28828761-28835655 long non-coding(lnc) isoforms of known genes 1994 44.78435 7
Osa11LNT0111600.2 11 Osa11LNG0111600 28989486-29000858 long non-coding(lnc) isoforms of known genes 2963 44.44819 21
Osa11LNT0111600.1 11 Osa11LNG0111600 28989486-29000858 long non-coding(lnc) isoforms of known genes 2875 44.45217 20
Osa11LNT0111600.3 11 Osa11LNG0111600 28989486-29000858 long non-coding(lnc) isoforms of known genes 2156 38.96104 12
Osa11LNT0087300.2 11 Osa11LNG0087300 2909410-2918095 long non-coding(lnc) isoforms of known genes 1526 44.69201 4
Osa11LNT0087300.1 11 Osa11LNG0087300 2909410-2918095 long non-coding(lnc) isoforms of known genes 2615 42.63862 6
Osa11LNT0082700.1 11 Osa11LNG0082700 295789-301636 long non-coding(lnc) isoforms of known genes 3669 47.88771 7
Osa11LNT0082700.2 11 Osa11LNG0082700 295789-301636 long non-coding(lnc) isoforms of known genes 3671 47.86162 7
Osa11LNT0532000.1 11 Osa11LNG0532000 3141458-3141741 intergenetic lncRNA (lincRNA) 284 25.0 1
Osa11LNT0532100.1 11 Osa11LNG0532100 3141458-3141741 intergenetic lncRNA (lincRNA) 284 25.0 1
Osa11LNT0532200.1 11 Osa11LNG0532200 3141807-3142050 intergenetic lncRNA (lincRNA) 244 26.63934 1
Osa11LNT0087400.1 11 Osa11LNG0087400 3389321-3395874 long non-coding(lnc) isoforms of known genes 3617 46.39204 6
Osa11LNT0087500.1 11 Osa11LNG0087500 3418636-3424010 long non-coding(lnc) isoforms of known genes 2373 47.40834 13
Osa11LNT0082800.1 11 Osa11LNG0082800 342438-347655 long non-coding(lnc) isoforms of known genes 1710 44.15205 5
Osa11LNT0087600.1 11 Osa11LNG0087600 3463910-3467993 long non-coding(lnc) isoforms of known genes 2221 49.79739 2
Osa11LNT0087700.2 11 Osa11LNG0087700 3464914-3465948 Antisense lncRNA 327 44.0367 4
Osa11LNT0087700.1 11 Osa11LNG0087700 3464914-3465948 Antisense lncRNA 390 45.38462 3
Osa11LNT0087700.3 11 Osa11LNG0087700 3464914-3465948 Antisense lncRNA 456 45.39474 4
Osa11LNT0087800.1 11 Osa11LNG0087800 3652754-3653647 intergenetic lncRNA (lincRNA) 584 57.36301 2
Osa11LNT0087900.1 11 Osa11LNG0087900 3739630-3743522 long non-coding(lnc) isoforms of known genes 2775 46.73874 4
Osa11LNT0088000.1 11 Osa11LNG0088000 3740057-3742189 long non-coding(lnc) isoforms of known genes 1692 44.20804 2
Osa11LNT0088100.2 11 Osa11LNG0088100 3776852-3778870 long non-coding(lnc) isoforms of known genes 1236 47.3301 3
Osa11LNT0088100.1 11 Osa11LNG0088100 3776852-3778870 long non-coding(lnc) isoforms of known genes 1488 50.26882 2
Osa11LNT0082900.1 11 Osa11LNG0082900 397421-401936 long non-coding(lnc) isoforms of known genes 2482 44.92345 10
Osa11LNT0088200.1 11 Osa11LNG0088200 4004606-4010994 long non-coding(lnc) isoforms of known genes 1313 46.68698 9
Osa11LNT0088300.1 11 Osa11LNG0088300 4014842-4017984 long non-coding(lnc) isoforms of known genes 2110 44.64455 6
Osa11LNT0088400.1 11 Osa11LNG0088400 4134329-4140479 long non-coding(lnc) isoforms of known genes 2061 46.04561 8
Osa11LNT0088500.1 11 Osa11LNG0088500 4299277-4301777 long non-coding(lnc) isoforms of known genes 2412 52.4461 2
Osa11LNT0532300.1 11 Osa11LNG0532300 4475197-4475453 intergenetic lncRNA (lincRNA) 257 25.29183 1
Osa11LNT0088600.1 11 Osa11LNG0088600 4505037-4505792 intergenetic lncRNA (lincRNA) 756 58.46561 1
Osa11LNT0088700.1 11 Osa11LNG0088700 4529725-4529981 intronic lncRNA 257 26.84825 1
Osa11LNT0088800.1 11 Osa11LNG0088800 4529725-4529981 intronic lncRNA 257 26.84825 1
Osa11LNT0088900.1 11 Osa11LNG0088900 4533901-4534143 intronic lncRNA 243 24.69136 1
Osa11LNT0089000.3 11 Osa11LNG0089000 4557869-4566678 long non-coding(lnc) isoforms of known genes 3142 47.5175 13
Osa11LNT0089000.4 11 Osa11LNG0089000 4557869-4566678 long non-coding(lnc) isoforms of known genes 2890 47.61246 13
Osa11LNT0089000.2 11 Osa11LNG0089000 4557869-4566678 long non-coding(lnc) isoforms of known genes 3168 47.25379 10
Osa11LNT0089000.1 11 Osa11LNG0089000 4557869-4566678 long non-coding(lnc) isoforms of known genes 2877 47.65381 13
Osa11LNT0089100.1 11 Osa11LNG0089100 4559721-4559941 intronic lncRNA 221 43.8914 1
Osa11LNT0083000.1 11 Osa11LNG0083000 457195-461669 long non-coding(lnc) isoforms of known genes 3996 47.0971 3
Osa11LNT0089200.1 11 Osa11LNG0089200 4624773-4624979 intergenetic lncRNA (lincRNA) 207 24.15459 1
Osa11LNT0089300.1 11 Osa11LNG0089300 4686726-4687695 intergenetic lncRNA (lincRNA) 970 37.83505 1
Osa11LNT0089500.1 11 Osa11LNG0089500 4866531-4871507 long non-coding(lnc) isoforms of known genes 1762 45.3462 9
Osa11LNT0089400.1 11 Osa11LNG0089400 4894703-4898060 long non-coding(lnc) isoforms of known genes 2814 38.30846 3
Osa11LNT0089600.1 11 Osa11LNG0089600 5168892-5171213 long non-coding(lnc) isoforms of known genes 2118 38.52691 3
Osa11LNT0089700.1 11 Osa11LNG0089700 5173514-5176121 long non-coding(lnc) isoforms of known genes 1337 47.3448 4
Osa11LNT0532400.1 11 Osa11LNG0532400 5200487-5200764 intergenetic lncRNA (lincRNA) 278 26.61871 1
Osa11LNT0532500.1 11 Osa11LNG0532500 5200487-5200764 intergenetic lncRNA (lincRNA) 278 26.61871 1
Osa11LNT0089800.1 11 Osa11LNG0089800 5236336-5240680 sense lncRNA 665 58.19549 2
Osa11LNT0083100.1 11 Osa11LNG0083100 528175-530582 intergenetic lncRNA (lincRNA) 722 44.18283 2
Osa11LNT0083200.1 11 Osa11LNG0083200 531045-532220 long non-coding(lnc) isoforms of known genes 630 54.92063 2
Osa11LNT0089900.1 11 Osa11LNG0089900 5336615-5339804 sense lncRNA 2986 44.70864 3
Osa11LNT0090000.1 11 Osa11LNG0090000 5433678-5434171 intergenetic lncRNA (lincRNA) 494 56.47773 1
Osa11LNT0532600.1 11 Osa11LNG0532600 5450912-5451170 intergenetic lncRNA (lincRNA) 259 42.47104 1
Osa11LNT0090100.1 11 Osa11LNG0090100 5557263-5560160 long non-coding(lnc) isoforms of known genes 2092 47.89675 4
Osa11LNT0090200.1 11 Osa11LNG0090200 5630727-5634825 long non-coding(lnc) isoforms of known genes 2314 45.59205 4
Osa11LNT0083300.1 11 Osa11LNG0083300 563239-564130 sense lncRNA 675 54.66667 3
Osa11LNT0090300.2 11 Osa11LNG0090300 5770591-5772063 intergenetic lncRNA (lincRNA) 842 55.81948 3
Osa11LNT0090300.1 11 Osa11LNG0090300 5770591-5772063 intergenetic lncRNA (lincRNA) 972 53.39506 2
Osa11LNT0090400.1 11 Osa11LNG0090400 5835137-5840796 long non-coding(lnc) isoforms of known genes 2490 42.20884 14
Osa11LNT0090500.1 11 Osa11LNG0090500 5873537-5881813 long non-coding(lnc) isoforms of known genes 2371 40.95318 15
Osa11LNT0090600.1 11 Osa11LNG0090600 5898818-5902693 long non-coding(lnc) isoforms of known genes 2301 45.71925 10
Osa11LNT0090800.1 11 Osa11LNG0090800 5922025-5926143 long non-coding(lnc) isoforms of known genes 1280 45.46875 9