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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs

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Transcript id Chrom Gene Location Classification Length GC Content(%) Exon Number
Osa01LNT0010200.1 1 Osa01LNG0010200 7590433-7592743 long non-coding(lnc) isoforms of known genes 1171 48.50555 7
Osa01LNT0010300.1 1 Osa01LNG0010300 7806682-7810969 long non-coding(lnc) isoforms of known genes 2034 43.06785 11
Osa01LNT0010400.1 1 Osa01LNG0010400 7857828-7860054 long non-coding(lnc) isoforms of known genes 1486 42.46299 6
Osa01LNT0010600.2 1 Osa01LNG0010600 7862088-7867709 long non-coding(lnc) isoforms of known genes 2353 45.77136 12
Osa01LNT0010600.1 1 Osa01LNG0010600 7862088-7867709 long non-coding(lnc) isoforms of known genes 3389 41.90027 11
Osa01LNT0010500.1 1 Osa01LNG0010500 7872790-7873664 intronic lncRNA 875 40.22857 1
Osa01LNT0010800.2 1 Osa01LNG0010800 7894961-7900549 long non-coding(lnc) isoforms of known genes 2532 41.94313 6
Osa01LNT0010800.1 1 Osa01LNG0010800 7894961-7900549 long non-coding(lnc) isoforms of known genes 1911 45.05495 7
Osa01LNT0010700.1 1 Osa01LNG0010700 7904338-7904892 intergenetic lncRNA (lincRNA) 555 65.04505 1
Osa01LNT0454800.1 1 Osa01LNG0454800 7991649-7991923 intergenetic lncRNA (lincRNA) 275 25.09091 1
Osa01LNT0454900.1 1 Osa01LNG0454900 7991649-7991923 intergenetic lncRNA (lincRNA) 275 25.09091 1
Osa01LNT0455000.1 1 Osa01LNG0455000 7992096-7992357 intergenetic lncRNA (lincRNA) 262 40.07634 1
Osa01LNT0000700.1 1 Osa01LNG0000700 804139-806932 long non-coding(lnc) isoforms of known genes 1390 41.72662 5
Osa01LNT0010900.1 1 Osa01LNG0010900 8047388-8055598 long non-coding(lnc) isoforms of known genes 4402 42.84416 17
Osa01LNT0011100.1 1 Osa01LNG0011100 8179040-8183105 long non-coding(lnc) isoforms of known genes 1225 48.40816 9
Osa01LNT0011000.1 1 Osa01LNG0011000 8184451-8184815 intergenetic lncRNA (lincRNA) 365 48.21918 1
Osa01LNT0011200.1 1 Osa01LNG0011200 8212480-8215091 long non-coding(lnc) isoforms of known genes 751 47.93609 7
Osa01LNT0011300.3 1 Osa01LNG0011300 8250831-8263554 intergenetic lncRNA (lincRNA) 3291 50.59253 13
Osa01LNT0011300.2 1 Osa01LNG0011300 8250831-8263554 intergenetic lncRNA (lincRNA) 1997 46.82023 11
Osa01LNT0011300.1 1 Osa01LNG0011300 8250831-8263554 intergenetic lncRNA (lincRNA) 3655 49.41176 14
Osa01LNT0011400.2 1 Osa01LNG0011400 8356553-8362270 long non-coding(lnc) isoforms of known genes 2345 43.24094 6
Osa01LNT0011400.1 1 Osa01LNG0011400 8356553-8362270 long non-coding(lnc) isoforms of known genes 2765 42.71248 4
Osa01LNT0011400.3 1 Osa01LNG0011400 8356553-8362270 long non-coding(lnc) isoforms of known genes 2086 43.91179 6
Osa01LNT0011500.1 1 Osa01LNG0011500 8367277-8373144 long non-coding(lnc) isoforms of known genes 2280 44.82456 7
Osa01LNT0011600.1 1 Osa01LNG0011600 8414471-8414684 Antisense lncRNA 214 45.79439 1
Osa01LNT0011700.1 1 Osa01LNG0011700 8560807-8569501 long non-coding(lnc) isoforms of known genes 3513 41.44606 13
Osa01LNT0011800.1 1 Osa01LNG0011800 8689052-8689786 intergenetic lncRNA (lincRNA) 735 42.04082 1
Osa01LNT0012000.1 1 Osa01LNG0012000 8701299-8708612 long non-coding(lnc) isoforms of known genes 2126 48.0715 16
Osa01LNT0011900.1 1 Osa01LNG0011900 8726475-8726941 intergenetic lncRNA (lincRNA) 467 58.88651 1
Osa01LNT0012300.2 1 Osa01LNG0012300 8885632-8892462 long non-coding(lnc) isoforms of known genes 2761 47.51901 6
Osa01LNT0012300.1 1 Osa01LNG0012300 8885632-8892462 long non-coding(lnc) isoforms of known genes 3140 51.87898 7
Osa01LNT0012200.1 1 Osa01LNG0012200 8921321-8924862 sense lncRNA 3442 44.9448 2
Osa01LNT0012100.1 1 Osa01LNG0012100 8968578-8969192 intergenetic lncRNA (lincRNA) 615 51.21951 1
Osa01LNT0012400.1 1 Osa01LNG0012400 9004534-9008221 long non-coding(lnc) isoforms of known genes 1607 50.84007 6
Osa01LNT0012600.1 1 Osa01LNG0012600 9024970-9028874 long non-coding(lnc) isoforms of known genes 2064 48.49806 9
Osa01LNT0012600.2 1 Osa01LNG0012600 9024970-9028874 long non-coding(lnc) isoforms of known genes 1619 51.51328 11
Osa01LNT0012500.1 1 Osa01LNG0012500 9057858-9061006 long non-coding(lnc) isoforms of known genes 1240 48.95161 3
Osa01LNT0012700.1 1 Osa01LNG0012700 9067828-9071386 long non-coding(lnc) isoforms of known genes 1011 51.92878 7
Osa01LNT0012800.1 1 Osa01LNG0012800 9104708-9105177 intergenetic lncRNA (lincRNA) 470 54.89362 1
Osa01LNT0012900.3 1 Osa01LNG0012900 9114579-9117424 long non-coding(lnc) isoforms of known genes 1750 49.2 5
Osa01LNT0012900.2 1 Osa01LNG0012900 9114579-9117424 long non-coding(lnc) isoforms of known genes 1954 48.61822 5
Osa01LNT0012900.1 1 Osa01LNG0012900 9114579-9117424 long non-coding(lnc) isoforms of known genes 2545 44.40079 4
Osa01LNT0013000.1 1 Osa01LNG0013000 9133740-9140430 long non-coding(lnc) isoforms of known genes 2131 42.28062 12
Osa01LNT0013000.2 1 Osa01LNG0013000 9133740-9140430 long non-coding(lnc) isoforms of known genes 2000 43.05 13
Osa01LNT0013100.1 1 Osa01LNG0013100 9173234-9175902 long non-coding(lnc) isoforms of known genes 1068 51.59176 4
Osa01LNT0013200.1 1 Osa01LNG0013200 9268690-9272900 long non-coding(lnc) isoforms of known genes 1928 50.41494 7
Osa01LNT0013300.1 1 Osa01LNG0013300 9273876-9279025 long non-coding(lnc) isoforms of known genes 2268 52.24868 10
Osa01LNT0000800.1 1 Osa01LNG0000800 927700-929185 intronic lncRNA 569 43.93673 2
Osa01LNT0000900.1 1 Osa01LNG0000900 929884-934895 long non-coding(lnc) isoforms of known genes 2552 48.35423 12
Osa01LNT0013400.1 1 Osa01LNG0013400 9319087-9323338 long non-coding(lnc) isoforms of known genes 1882 50.53135 10