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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs

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Transcript id Chrom Gene Location Classification Length GC Content(%) Exon Number
Osa11LNT0090700.1 11 Osa11LNG0090700 5946387-5946999 intergenetic lncRNA (lincRNA) 613 33.93148 1
Osa11LNT0090900.1 11 Osa11LNG0090900 6088031-6091472 long non-coding(lnc) isoforms of known genes 1423 52.07309 6
Osa11LNT0091000.1 11 Osa11LNG0091000 6114798-6127569 long non-coding(lnc) isoforms of known genes 2687 44.13844 18
Osa11LNT0532800.1 11 Osa11LNG0532800 6139544-6139817 intergenetic lncRNA (lincRNA) 274 25.18248 1
Osa11LNT0532700.1 11 Osa11LNG0532700 6139544-6139817 intergenetic lncRNA (lincRNA) 274 25.18248 1
Osa11LNT0091100.1 11 Osa11LNG0091100 6201172-6205038 long non-coding(lnc) isoforms of known genes 1549 45.77147 6
Osa11LNT0533000.1 11 Osa11LNG0533000 6214240-6214514 intergenetic lncRNA (lincRNA) 275 26.90909 1
Osa11LNT0532900.1 11 Osa11LNG0532900 6214240-6214514 intergenetic lncRNA (lincRNA) 275 26.90909 1
Osa11LNT0533100.1 11 Osa11LNG0533100 6243303-6243558 intergenetic lncRNA (lincRNA) 256 28.125 1
Osa11LNT0091200.1 11 Osa11LNG0091200 6520202-6520894 Antisense lncRNA 369 62.33062 5
Osa11LNT0091300.1 11 Osa11LNG0091300 6538667-6546026 long non-coding(lnc) isoforms of known genes 3617 48.41028 4
Osa11LNT0091400.1 11 Osa11LNG0091400 6638306-6642853 sense lncRNA 3316 42.73221 2
Osa11LNT0083400.1 11 Osa11LNG0083400 664534-671668 long non-coding(lnc) isoforms of known genes 3620 45.46961 8
Osa11LNT0091500.1 11 Osa11LNG0091500 6685665-6693917 long non-coding(lnc) isoforms of known genes 1078 54.73098 4
Osa11LNT0091500.2 11 Osa11LNG0091500 6685665-6693917 sense lncRNA 802 54.73815 3
Osa11LNT0091500.3 11 Osa11LNG0091500 6685665-6693917 long non-coding(lnc) isoforms of known genes 3013 54.39761 3
Osa11LNT0091600.1 11 Osa11LNG0091600 6861930-6865491 long non-coding(lnc) isoforms of known genes 811 56.10358 3
Osa11LNT0083500.1 11 Osa11LNG0083500 705974-708769 long non-coding(lnc) isoforms of known genes 1047 60.64947 3
Osa11LNT0533300.1 11 Osa11LNG0533300 7076416-7076690 intergenetic lncRNA (lincRNA) 275 24.72727 1
Osa11LNT0533200.1 11 Osa11LNG0533200 7076416-7076690 intergenetic lncRNA (lincRNA) 275 24.72727 1
Osa11LNT0091700.2 11 Osa11LNG0091700 7121644-7124832 intergenetic lncRNA (lincRNA) 518 41.89189 3
Osa11LNT0091700.1 11 Osa11LNG0091700 7121644-7124832 intergenetic lncRNA (lincRNA) 524 41.79389 3
Osa11LNT0091800.1 11 Osa11LNG0091800 7200088-7214571 long non-coding(lnc) isoforms of known genes 896 47.43304 6
Osa11LNT0092100.1 11 Osa11LNG0092100 7250435-7254519 long non-coding(lnc) isoforms of known genes 2399 43.97666 8
Osa11LNT0092100.3 11 Osa11LNG0092100 7250435-7254519 long non-coding(lnc) isoforms of known genes 1431 49.26625 9
Osa11LNT0092100.2 11 Osa11LNG0092100 7250435-7254519 long non-coding(lnc) isoforms of known genes 1437 48.99095 9
Osa11LNT0092000.1 11 Osa11LNG0092000 7261709-7263191 long non-coding(lnc) isoforms of known genes 1089 59.50413 3
Osa11LNT0091900.1 11 Osa11LNG0091900 7315376-7316109 intergenetic lncRNA (lincRNA) 734 46.59401 1
Osa11LNT0092400.1 11 Osa11LNG0092400 7393345-7400652 intergenetic lncRNA (lincRNA) 2051 51.19454 10
Osa11LNT0533400.1 11 Osa11LNG0533400 7401720-7401942 intergenetic lncRNA (lincRNA) 223 54.70852 1
Osa11LNT0092200.1 11 Osa11LNG0092200 7412918-7413715 intergenetic lncRNA (lincRNA) 662 56.34441 2
Osa11LNT0092300.1 11 Osa11LNG0092300 7443918-7444127 intergenetic lncRNA (lincRNA) 210 57.61905 1
Osa11LNT0092500.2 11 Osa11LNG0092500 7584428-7588362 long non-coding(lnc) isoforms of known genes 2128 45.72368 6
Osa11LNT0092500.1 11 Osa11LNG0092500 7584428-7588362 long non-coding(lnc) isoforms of known genes 2215 45.05643 5
Osa11LNT0092600.2 11 Osa11LNG0092600 7639427-7643558 long non-coding(lnc) isoforms of known genes 1889 52.14399 4
Osa11LNT0092600.1 11 Osa11LNG0092600 7639427-7643558 long non-coding(lnc) isoforms of known genes 1882 52.23167 4
Osa11LNT0092700.1 11 Osa11LNG0092700 7712102-7717070 sense lncRNA 4725 41.5873 2
Osa11LNT0092800.1 11 Osa11LNG0092800 7785470-7788458 sense lncRNA 2722 53.01249 3
Osa11LNT0092900.1 11 Osa11LNG0092900 7799557-7803174 Antisense lncRNA 226 63.27434 2
Osa11LNT0093100.1 11 Osa11LNG0093100 7806382-7812891 Antisense lncRNA 1009 45.6888 3
Osa11LNT0093000.1 11 Osa11LNG0093000 7889088-7889559 intergenetic lncRNA (lincRNA) 472 46.39831 1
Osa11LNT0533500.1 11 Osa11LNG0533500 7920900-7921182 intergenetic lncRNA (lincRNA) 283 53.71025 1
Osa11LNT0093200.1 11 Osa11LNG0093200 8018430-8026512 long non-coding(lnc) isoforms of known genes 1507 48.3079 10
Osa11LNT0533700.1 11 Osa11LNG0533700 8074708-8074956 intronic lncRNA 249 26.10442 1
Osa11LNT0533600.1 11 Osa11LNG0533600 8074708-8074956 intronic lncRNA 249 26.10442 1
Osa11LNT0533800.1 11 Osa11LNG0533800 8196164-8196423 intergenetic lncRNA (lincRNA) 260 32.69231 1
Osa11LNT0533900.1 11 Osa11LNG0533900 8196490-8196734 intergenetic lncRNA (lincRNA) 245 26.93878 1
Osa11LNT0093300.1 11 Osa11LNG0093300 8202809-8203194 intergenetic lncRNA (lincRNA) 386 41.96891 1
Osa11LNT0093400.1 11 Osa11LNG0093400 8362865-8363798 intergenetic lncRNA (lincRNA) 934 50.6424 1
Osa11LNT0093500.4 11 Osa11LNG0093500 8379344-8382036 long non-coding(lnc) isoforms of known genes 1506 58.16733 5
Osa11LNT0093500.2 11 Osa11LNG0093500 8379344-8382036 long non-coding(lnc) isoforms of known genes 1494 58.166 5
Osa11LNT0093500.1 11 Osa11LNG0093500 8379344-8382036 long non-coding(lnc) isoforms of known genes 1657 55.52203 4
Osa11LNT0093500.3 11 Osa11LNG0093500 8379344-8382036 long non-coding(lnc) isoforms of known genes 2133 49.88279 4
Osa11LNT0534000.1 11 Osa11LNG0534000 8405832-8406106 intergenetic lncRNA (lincRNA) 275 26.54545 1
Osa11LNT0534100.1 11 Osa11LNG0534100 8405832-8406106 intergenetic lncRNA (lincRNA) 275 26.54545 1
Osa11LNT0093600.1 11 Osa11LNG0093600 8417487-8422716 long non-coding(lnc) isoforms of known genes 1730 46.5896 12
Osa11LNT0083600.1 11 Osa11LNG0083600 845289-846998 long non-coding(lnc) isoforms of known genes 1461 38.6037 2
Osa11LNT0534200.1 11 Osa11LNG0534200 8521160-8521376 intergenetic lncRNA (lincRNA) 217 42.39631 1
Osa11LNT0534300.1 11 Osa11LNG0534300 8577243-8577503 intergenetic lncRNA (lincRNA) 261 39.84674 1
Osa11LNT0534400.1 11 Osa11LNG0534400 8578017-8578261 intergenetic lncRNA (lincRNA) 245 27.34694 1
Osa11LNT0093700.1 11 Osa11LNG0093700 8720618-8721496 intergenetic lncRNA (lincRNA) 879 57.56542 1
Osa11LNT0534500.1 11 Osa11LNG0534500 8730972-8731246 intergenetic lncRNA (lincRNA) 275 25.09091 1
Osa11LNT0534600.1 11 Osa11LNG0534600 8730972-8731246 intergenetic lncRNA (lincRNA) 275 25.09091 1
Osa11LNT0093800.1 11 Osa11LNG0093800 8789845-8796864 long non-coding(lnc) isoforms of known genes 2462 48.25345 7
Osa11LNT0534800.1 11 Osa11LNG0534800 8843580-8843854 intergenetic lncRNA (lincRNA) 275 25.81818 1
Osa11LNT0534700.1 11 Osa11LNG0534700 8843580-8843854 intergenetic lncRNA (lincRNA) 275 25.81818 1
Osa11LNT0093900.3 11 Osa11LNG0093900 8970147-8977429 long non-coding(lnc) isoforms of known genes 3322 45.99639 9
Osa11LNT0093900.2 11 Osa11LNG0093900 8970147-8977429 long non-coding(lnc) isoforms of known genes 3052 46.46134 6
Osa11LNT0093900.1 11 Osa11LNG0093900 8970147-8977429 long non-coding(lnc) isoforms of known genes 3645 44.41701 9
Osa11LNT0094000.1 11 Osa11LNG0094000 9055846-9059309 long non-coding(lnc) isoforms of known genes 1619 50.21618 5
Osa11LNT0094100.1 11 Osa11LNG0094100 9079181-9085404 long non-coding(lnc) isoforms of known genes 1463 49.21394 9
Osa11LNT0094100.2 11 Osa11LNG0094100 9079181-9085404 long non-coding(lnc) isoforms of known genes 1376 50.0 10
Osa11LNT0094200.1 11 Osa11LNG0094200 9178505-9184294 long non-coding(lnc) isoforms of known genes 1327 45.5162 12
Osa11LNT0534900.1 11 Osa11LNG0534900 9322410-9322682 intergenetic lncRNA (lincRNA) 273 25.64103 1
Osa11LNT0535000.1 11 Osa11LNG0535000 9322410-9322682 intergenetic lncRNA (lincRNA) 273 25.64103 1
Osa11LNT0094300.1 11 Osa11LNG0094300 9463373-9466447 long non-coding(lnc) isoforms of known genes 2577 45.9449 2
Osa11LNT0083700.1 11 Osa11LNG0083700 947566-952283 long non-coding(lnc) isoforms of known genes 2978 45.3996 5
Osa11LNT0083800.1 11 Osa11LNG0083800 959445-963088 long non-coding(lnc) isoforms of known genes 829 43.06393 2
Osa11LNT0083800.2 11 Osa11LNG0083800 959445-963088 long non-coding(lnc) isoforms of known genes 960 56.5625 2
Osa11LNT0094400.1 11 Osa11LNG0094400 9674510-9675803 intergenetic lncRNA (lincRNA) 1294 52.47295 1
Osa11LNT0094500.1 11 Osa11LNG0094500 9724503-9727093 long non-coding(lnc) isoforms of known genes 2059 32.58864 6
Osa11LNT0535200.1 11 Osa11LNG0535200 9764410-9764684 intergenetic lncRNA (lincRNA) 275 25.81818 1
Osa11LNT0535100.1 11 Osa11LNG0535100 9764410-9764684 intergenetic lncRNA (lincRNA) 275 25.81818 1
Osa11LNT0094600.1 11 Osa11LNG0094600 9815907-9820202 long non-coding(lnc) isoforms of known genes 2010 44.32836 10
Osa11LNT0535300.1 11 Osa11LNG0535300 9967781-9968022 intergenetic lncRNA (lincRNA) 242 26.03306 1
Osa11LNT0535500.1 11 Osa11LNG0535500 9968092-9968317 intergenetic lncRNA (lincRNA) 226 26.99115 1
Osa11LNT0535400.1 11 Osa11LNG0535400 9968092-9968317 intergenetic lncRNA (lincRNA) 226 26.99115 1
Osa12LNT0123600.1 12 Osa12LNG0123600 10016678-10016898 sense lncRNA 221 38.00905 1
Osa12LNT0113200.1 12 Osa12LNG0113200 1012305-1015316 long non-coding(lnc) isoforms of known genes 883 44.50736 5
Osa12LNT0123700.1 12 Osa12LNG0123700 10136113-10139539 long non-coding(lnc) isoforms of known genes 1770 50.56497 3
Osa12LNT0561400.1 12 Osa12LNG0561400 10214990-10215264 intergenetic lncRNA (lincRNA) 275 25.81818 1
Osa12LNT0561300.1 12 Osa12LNG0561300 10214990-10215264 intergenetic lncRNA (lincRNA) 275 25.81818 1
Osa12LNT0123800.1 12 Osa12LNG0123800 10405232-10405829 intergenetic lncRNA (lincRNA) 598 38.46154 1
Osa12LNT0123900.1 12 Osa12LNG0123900 10406234-10406722 intergenetic lncRNA (lincRNA) 409 38.63081 2
Osa12LNT0124000.1 12 Osa12LNG0124000 10436138-10443948 long non-coding(lnc) isoforms of known genes 2117 51.11006 9
Osa12LNT0124100.1 12 Osa12LNG0124100 10454542-10458551 long non-coding(lnc) isoforms of known genes 561 47.59358 3
Osa12LNT0558300.1 12 Osa12LNG0558300 1058699-1058943 intergenetic lncRNA (lincRNA) 245 27.34694 1
Osa12LNT0558400.1 12 Osa12LNG0558400 1058699-1058943 intergenetic lncRNA (lincRNA) 245 27.34694 1
Osa12LNT0124200.1 12 Osa12LNG0124200 10606417-10611137 long non-coding(lnc) isoforms of known genes 3084 43.38521 3
Osa12LNT0113300.1 12 Osa12LNG0113300 1070162-1072495 intergenetic lncRNA (lincRNA) 1925 38.85714 4